| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1161277 = | 35 (0.710) | 15 (0.380) | 13/206 | 2.5 | 36.5% | intergenic (+25/‑191) | PP_1013/yihS | sensor histidine kinase/aldose‑ketose isomerase |
| ? | NC_002947 | 1161350 = | 24 (0.610) | intergenic (+98/‑118) | PP_1013/yihS | sensor histidine kinase/aldose‑ketose isomerase | |||||
CAGTCGTTTGCGAATTCTAGCCAGCGGGGTCATGGCGGATGTCACGAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1161448‑1161277‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggttcacccgcgaagaGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGT > NC_002947/1161350‑1161490 CAGTCGTTTGCGAATTCTAGCCAGCGGGGTCATGGCGGATGTCACGAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAGCCTGACTCGGTCGTTGTA > 2:572156/1‑150 TTGCGAATTCTAGCCAGCGGGGTCATGGCGGATGTCACGAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAGCCTGACTCGGTCGTTGTAGGAGCGG < 1:572156/150‑1 ACGAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGC > 2:487739/1‑112 ACGAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGC < 1:487739/112‑1 GACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAG > 1:298577/1‑99 GACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAG < 2:298577/99‑1 CCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGT < 2:944752/72‑1 CCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGT > 1:944752/1‑72 TGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCA‑CCCAAAATGT > 2:409010/1‑107 TGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTGCACCCGCGAAGAAGCCCGCACAGGCA‑CCCAAAATGT < 1:409010/107‑1 CCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAA > 2:462464/1‑150 CCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGGTACATCCGCCATGACCCCGCTGGCTAGAATTCGCAA > 1:1038838/1‑150 CCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCAC > 1:398862/1‑85 CCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCAC < 2:398862/85‑1 GCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAAC > 2:826104/1‑150 GCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAA > 1:81003/1‑54 GCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAA < 2:81003/54‑1 CTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGT < 2:681291/108‑1 CTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGT > 1:681291/1‑108 TACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTG > 1:936932/1‑150 ACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCA < 2:618826/76‑1 ACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGAGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCA > 1:618826/1‑76 GACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACC < 2:783342/120‑1 GACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACC > 1:783342/1‑120 CTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGG < 1:462464/150‑1 AGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCTGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAG < 1:457968/127‑1 AGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCTGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAG > 2:457968/1‑127 GGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACC > 2:60137/1‑150 TTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGCATCACCCTGGCCCATAACCCCCCCCAACCcc > 2:1247116/1‑148 TCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGT < 1:60137/150‑1 ACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTAT < 2:207193/150‑1 ACCCGCGAAGAAGCCCGCACAGGCACCCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTA > 2:1110956/1‑150 CCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATG < 1:741547/150‑1 CCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGT > 2:1055699/1‑150 CCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGA > 2:1149577/1‑131 CCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGA < 1:1149577/131‑1 CAGTCGTTTGCGAATTCTAGCCAGCGGGGTCATGGCGGATGTCACGAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1161448‑1161277‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggttcacccgcgaagaGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGT > NC_002947/1161350‑1161490 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |