New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1491962 =	21 (0.780)	4 (0.190)	3/234	2.8	23.7%	intergenic (+22/+108)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
	?	NC_002947	1492052 =	9 (0.420)					intergenic (+112/+18)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS

TCGCCGAGGTGGGGCTGCGGCCGCCACCGGCGCCGGCTGCCAGCCAGGAAGAGAAATAAACCCAGGGCCGCGTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1492128‑1491962 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTC  >  NC_002947/1492052‑1492136                                                                                                                                                                                                                                                              TCGCCGAGGTGGGGCTGCGGCCGCCACCGGCGCCGGCTGCCAGCCAGGAAGAGAAATAAACCCAGGGCCGCGTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGG                                                                                                        <  2:237004/150‑1  CGCCGAGGTGGGGCTGCGGCCGCCACCGGCGCCGGCTGCCAGCCAGGAAGAGAAATAAACCCAGGGCCGCGTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGG                                                                                                       <  1:545548/150‑1              GCTGCGGCCGCCACCGGCGCCGGCTGCCAGCCAGGAAGAGAAATAAACCCAGGGCCGCGTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGCGTGCCCGCGAA                                                                                           >  1:251080/1‑150                TGCGGCCGCCACCGGCGCCGGCTGCCAGCCAGTAAGATAAATAAACCCCGGGCCGGGTGGCGGCCGTTCGGGGGCACGCCCGCTCCCACAGGAATTACGCCGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGCGTGCCCGCGAAGG                                                                                         <  2:28378/150‑1                                                                                               CCGCTCCCACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGC‑‑CGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATC        >  1:526908/1‑150                                                                                                      CACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTT   >  2:334722/1‑150                                                                                                      CACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTT   >  2:393005/1‑150                                                                                                       ACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTC  >  2:487781/1‑150                                                                                                                                                                                                                                                              TCGCCGAGGTGGGGCTGCGGCCGCCACCGGCGCCGGCTGCCAGCCAGGAAGAGAAATAAACCCAGGGCCGCGTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1492128‑1491962 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTC  >  NC_002947/1492052‑1492136

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.