| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1491962 = | 21 (0.780) | 4 (0.190) | 3/234 | 2.8 | 23.7% | intergenic (+22/+108) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS |
| ? | NC_002947 | 1492052 = | 9 (0.420) | intergenic (+112/+18) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS | |||||
TGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCG > NC_002947/1491819‑1492107 | tGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTc < 2:426827/150‑1 (MQ=255) gAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCgg < 2:78547/150‑1 (MQ=255) tCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCGGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCggg < 1:488529/137‑1 (MQ=255) tCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCGGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCggg < 1:488548/137‑1 (MQ=255) tCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCGGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCggg > 2:488548/1‑137 (MQ=255) tCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCGGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCggg > 2:488529/1‑137 (MQ=255) tCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTccc > 2:190542/1‑150 (MQ=255) cGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGG‑CGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCt < 2:512025/150‑1 (MQ=255) tgtgGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCtt < 2:154040/150‑1 (MQ=255) ggAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTGTgg > 2:219518/1‑150 (MQ=255) gcgcCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTa < 2:44228/150‑1 (MQ=255) tGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCtgt < 1:572029/150‑1 (MQ=255) tGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCtgt < 1:572010/150‑1 (MQ=255) gaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCtgt > 2:487781‑M1/86‑150 (MQ=255) aagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCtgtg > 2:334722‑M1/85‑150 (MQ=255) aagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCtgtg > 2:393005‑M1/85‑150 (MQ=255) gatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcggcaGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCgg > 1:526908‑M1/78‑150 (MQ=255) ggCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGc > 2:46605/1‑150 (MQ=255) gATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTAACTTCctggctg > 2:287818/1‑150 (MQ=255) cTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCCCGCCCCCAGGTTTTGCGCTGGCTTTTGGGCCGGCGTAATTGCGGTGGGCGCGGGCGTGCCCCCGAAGGGCCGCAACGCGGCCCGGGGGTTTTTTGTCTTCCTGGGTGGCAg > 1:541812/1‑150 (MQ=255) gcgCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTTATTCCGGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCGGGGGTTATTTCTCTTCCTGGCTGGCCGCCGGCGCCGGTggc > 2:364822/3‑150 (MQ=38) cgccAGCCCTTCGCGGGCACGCCCGCCCCCCCTGGTTGCGCGCGGGCTTTGGTGCCGGCTTATTTCGTGTGGGGGGGGGCGGGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTggc < 1:55283/147‑1 (MQ=255) cgGCCGCCCTTCGCGGGCCCGCCCGCCCCCACCGTTTCCGCGGGGGCTTTGGCGCCGGCTTAATCCCGGTGGGCGCGGGCGGGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTggc < 1:55279/150‑1 (MQ=255) cgGCCGCCCTGGGCGGCCCCGCCCGCCCCCCCTGGTTGCCCGCGGGGTTGGCAGCGTGCTTACTGCGGGGGGGGGCGGGGGGCCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTggc < 1:219518/150‑1 (MQ=255) ggCAGCCCTTCGCGGGCCCGCCCGCGCCCCCAGGTTTCGCGCGGGCTTTGGCGCCTGCGTATTTCCTGTGGGCGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTggcg < 1:46605/150‑1 (MQ=255) | TGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCG > NC_002947/1491819‑1492107 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |