New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1491962 =	21 (0.780)	4 (0.190)	3/234	2.8	23.7%	intergenic (+22/+108)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
	?	NC_002947	1492052 =	9 (0.420)					intergenic (+112/+18)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS

GATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCG  >  NC_002947/1491939‑1492153                                                                                                                  |                                                                                                      gATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTAACTTCctggctg                                                                   >  2:287818/1‑150 (MQ=255)     cTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCCCGCCCCCAGGTTTTGCGCTGGCTTTTGGGCCGGCGTAATTGCGGTGGGCGCGGGCGTGCCCCCGAAGGGCCGCAACGCGGCCCGGGGGTTTTTTGTCTTCCTGGGTGGCAg                                                               >  1:541812/1‑150 (MQ=255)                   gcgCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTTATTCCGGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCGGGGGTTATTTCTCTTCCTGGCTGGCCGCCGGCGCCGGTggc                                                 >  2:364822/3‑150 (MQ=38)                   cgccAGCCCTTCGCGGGCACGCCCGCCCCCCCTGGTTGCGCGCGGGCTTTGGTGCCGGCTTATTTCGTGTGGGGGGGGGCGGGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTggc                                                 <  1:55283/147‑1 (MQ=255)                   cgGCCGCCCTTCGCGGGCCCGCCCGCCCCCACCGTTTCCGCGGGGGCTTTGGCGCCGGCTTAATCCCGGTGGGCGCGGGCGGGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTggc                                                 <  1:55279/150‑1 (MQ=255)                   cgGCCGCCCTGGGCGGCCCCGCCCGCCCCCCCTGGTTGCCCGCGGGGTTGGCAGCGTGCTTACTGCGGGGGGGGGCGGGGGGCCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTggc                                                 <  1:219518/150‑1 (MQ=255)                    ggCAGCCCTTCGCGGGCCCGCCCGCGCCCCCAGGTTTCGCGCGGGCTTTGGCGCCTGCGTATTTCCTGTGGGCGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTggcg                                                <  1:46605/150‑1 (MQ=255)                          CCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCGGCGTAATTCCTGTGGGAGCGGGCGTGCCCCCGAACGGCCGCCACCCGGCCCGGGGTTTATTTATCTTACTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCa                                          <  2:28378‑M1/150‑1 (MQ=255)                            TTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGc                                        >  1:251080‑M1/1‑150 (MQ=255)                                        CCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCg                            <  1:545548‑M1/150‑1 (MQ=255)                                         ccgctcccacaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcTGC‑‑CGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATc                         >  1:526908‑M2/74‑150 (MQ=255)                                         CCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGa                           <  2:237004‑M1/150‑1 (MQ=255)                                                cacaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCtt                    >  2:334722‑M2/67‑150 (MQ=255)                                                cacaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCtt                    >  2:393005‑M2/67‑150 (MQ=255)                                                 acaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTc                   >  2:487781‑M2/66‑150 (MQ=255)                                                       ttcgcgcTGGCTTTGGAGCCTGCGTAATTCCTGTGGGCGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAActgc             <  1:190542/147‑1 (MQ=255)                                                                  tttGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTgcg  >  2:131197/1‑150 (MQ=255)                                                                                                                  |                                                                                                      GATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCG  >  NC_002947/1491939‑1492153

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.