New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5133802 =	18 (0.670)	6 (0.230)	5/278	2.5	27.3%	coding (300/438 nt)	PP_4515	MarR family transcriptional regulator
	?	NC_002947	5133835 =	15 (0.590)					coding (267/438 nt)	PP_4515	MarR family transcriptional regulator

GGCGGGCGAAGAAGATTGTACTGTGCCCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5133833‑5133802 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgccgATCCTCCAGCACCGCCTGCCGGCGCACCAGCCCTTGCGCTTCCAGGCTGTCGAGCAGACGCGCCAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACA  >  NC_002947/5133835‑5133980                                                                                                                                                                                    GGCGGGCGAAGAAGATTGTACTGTGCCCGCCGATCCTCCAGCACCGCCTGCCGGCGCACC                                                                                                                        >  1:398194/1‑60 GGCGGGCGAAGAAGATTGTACTGTGCCCGCCGATCCTCCAGCACCGCCTGCCGGCGCACC                                                                                                                        <  2:398194/60‑1     GGCGAAGAAGATTGTACTGTGCCCGCCGATCCTCCAGCACCGCCTGCCGGCGCACCAGCCCTTGCGCTTCCAGGCTGTCGAGCAGACGCGCCAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTT                          >  1:375495/1‑150     GGCGAAGAAGATTGTACTGTGCCCGCCGATCCTCCAGCACCGCCTGCCGGCGCACCAGCCCTTGCGCTTCCAGGCTGTCGAGCAGACGAGCAAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGATGTGTCGGGGCTTCTa                          >  1:375479/1‑149          AGAAGATTGTACTGTGCCCGCCGATCCTCCAGCACCGCCTGCCGGCGCACCAGCCCTTGCGCTTCCAGGCTGTCGAGCAGACGCGCCAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAG                     >  1:20684/1‑150                      TGTGCCCGCCGATCCTCCAGCACCGCCTGCCGGCGCACCAGCCCTTGCGCTTCCAGGCTGTCGAGCAGACGCGCCAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGC         >  2:312544/1‑150                             GCCGATCCTCCAGCACCGCCTGCCGGCGCACCAGCCCTTGCGCTTCCAGGCTGTCGAGCAGACTCGCCAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACA  >  1:85075/1‑150                                                                                                                                                                                    GGCGGGCGAAGAAGATTGTACTGTGCCCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5133833‑5133802 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgccgATCCTCCAGCACCGCCTGCCGGCGCACCAGCCCTTGCGCTTCCAGGCTGTCGAGCAGACGCGCCAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGCTGTGTCGGGGCTTCTTCGAAGCGGGCCAGGTGCAGCAACA  >  NC_002947/5133835‑5133980

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.