| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5133802 = | 18 (0.670) | 6 (0.230) | 5/278 | 2.5 | 27.3% | coding (300/438 nt) | PP_4515 | MarR family transcriptional regulator |
| ? | NC_002947 | 5133835 = | 15 (0.590) | coding (267/438 nt) | PP_4515 | MarR family transcriptional regulator | |||||
GGGTGAGCTCAGGACTTTTCGAGGTTGGCCAGGATCTTGGCATGCACGCGCATACAGACCTGCAAGTCCGCCTCGTCCACGCCGGTAAACAGCTCTACCCGCAGCTGGTTGGCGATGGTCTCGATCTGATCGATCAACGGCTTGGCCGGCGGGCACAGTACAATCTTCTTCGCCCGCCGATCCTCCAGCACCGCCTGCCGGCGCACCAGCCCTTGCGCTTCCAGGCTGTCGAGCAGACGCGCCAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGC > NC_002947/5133656‑5133940 | tgttgctgcacctggcccgcttcgaagaagccccgacacagcgtgagctggcccagagcgtaggcgtcgaaggcccgaccctggcgagtctgctcgacagcctggaagcgcaagggctggtgcgccggcaggcggtgctggaggatcggc > 1:85075‑M1/147‑150 (MQ=255) gcacctggcccgcttcgaagaagccccgacacagcgtgagctggcccagagcgtaggcgtcgaaggcccgaccctggcgcgtctgctcgacagcctggaagcgcaagggctggtgcgccggcaggcggtgctggaggatCGGCGGGcaca > 2:312544‑M1/140‑150 (MQ=255) tCAGGACTTTTCGAGGTTGGCCAGGATCTTGGCATGCACGCGCATACAGACCTGCAAGTCCGCCTCGTCCACGCCGGTAAACAGCTCTACCCGCAGCTGGTTGGCGATGGTCTCGATCTGATCGATCAACGGCTTGGCCGGCGGGCACAg > 1:76299/1‑150 (MQ=255) aGGACTTTTCGAGGTTGGCCAGGATCTTGGCATGCACGCGCATACAGACCTGCAAGTCCGCCTCGTCCACGCCGGTAAACAGCTCTACCCGCAGCTGGTTGGCGATGGTCTCGATCTGATCGATCAACGGCTTGGCCGGCGGGCACAGTa > 2:250192/1‑150 (MQ=255) ttCGAGGTTGGCCAGGATCTTGGCATGCACGCGCATACAGACCTGCAAGTCCGCCTCGTCCACGCCGGTAAACAGCTCTACCCGCAGCTGGTTGGCGATGGTCTCGATCTGATCGATCAACGGCTTGGCCGGCGGGCACAGTACAAtctt > 2:421129/1‑150 (MQ=255) ttCGAGGTTGGCCACGATCTTGGCATGCACGCGCATACAGAACTGCAAGACCGCCACGTCCACGCCGGTAAACAGCTCTACCCGCAGCTGGATGGCGATGGTCTCGATCTGATCGATCAACGCCTAGGCCGCCGGGCACAGTACAAactg > 2:421133/1‑149 (MQ=255) tCGAGGTTGGCCAGGATCTTGGCATGCACGCGCATACAGACCTGCAAGTCCGCCTCGTCCACGCCGGTAAACAGCTCTACCCGCAGCTGGTTGGCGATGGTCTCGATCTGATCGATCAACGGCTTGGCCGGCGGGCACAGTACAAtcttc < 2:566308/150‑1 (MQ=255) cttcgaagaagccccgacacagcgtgagctggcccagagcgtaggcgtcgaaggcccgaccctggcgcgtctgctcgacagcctggaagcgcaagggctggtgcgccggcaggcggtgctggaggatCGGCGGGCACAGTACAAtcttct > 1:20684‑M1/128‑150 (MQ=255) aGGTTTGCCAGGATCTTGGCTTGCACGCGCATTCAGACCTGCAAGTCCGCCTCGTCCACGCCGGTAAACAGCTCTACACGCAGCTGGTTGGCGATTGTCTCGATCTGATCGATCAACGGCTTGGCCGGCGGGCACAGTACAATCttcttc < 2:542598/150‑1 (MQ=255) tagaagccccgacacatcgtgagctggcccagagcgtaggcgtcgaaggcccgacccttgctcgtctgctcgacagcctggaagcgcaagggctggtgcgccggcaggcggtgctggaggatCGGCGGGCACAGTACAATCTTCTTcgcc > 1:375479‑M1/123‑150 (MQ=255) aagaagccccgacacagcgtgagctggcccagagcgtaggcgtcgaaggcccgaccctggcgcgtctgctcgacagcctggaagcgcaagggctggtgcgccggcaggcggtgctggaggatCGGCGGGCACAGTACAATCTTCTTcgcc > 1:375495‑M1/123‑150 (MQ=255) cAGGATCTTGGCATGCACGCGCATACAGACCTGCAAGTCCGCCTCGTCCACGCCGGTAAACAGCTCTACCCGCAGCTGGTTGGCGATGGTCTCGATCTGATCGATCAACGGCTTGGCCGGCGGGCACAGTACAATCTTCTTCGCccgccg < 2:89381/150‑1 (MQ=255) gcATACAGACCTGCAAGTCCGCCTCGTCCACGCCGGTAAACAGCTCTACCCGCAGCTGGTTGGCGATGGTCTCGATCTGATCGATCAACGGCTTGGCCGGCGGGCACAGTACAATCTTCTTCGCCCGCCGATCCTCCAGCACCGCCTGcc > 1:422773/1‑150 (MQ=255) ctgcatgACCTGCAAGTCCGCCTCGTCCACGCCGGTAAACAGCTCTACCCGCAGCTGGTTGGCGATGGTCTCGATCTGATCGATCAACGGCTTGGCCGGCGGGCACAGTACAATCTTCTTCGCCCGCCGATCCTCCAGCACCGCCTGCCg < 2:391784/144‑1 (MQ=255) tGCAAGTCCGCCTCGTCCACGCCGGTAAACAGCTCTACCCGCAGCTGGTTGGCGATGGTCTCGATCTGATCGATCAACGGCTTGGCCGGCGGGCACAGTACAATCTTCTTCGCCCGCCGATCCTCCAGCACCGCCTGCCGGCGCACCAGc < 2:76299/150‑1 (MQ=255) ccGCCTCGTCCACGCCGGTAAACAGCTCTACCCGCAGCTGGTTGGCGATGGTCTCGATCTGATCGATCAACGGCTTGGCCGGCGGGCACAGTACAATCTTCTTCGCCCGCCGATCCTCCAGCACCGCCTGCCGGCGCACCAGCCCTTgcg > 2:88354/1‑150 (MQ=255) tCCACGCCGGTAAACAGCTCTACCCGCAGCTGGTTGGCGATGGTCTCGATCTGATCGATCAACGGCTTGGCCGGCGGGCACAGTACAATCTTCTTCGCCCGCCGATCCTCCAGCACCGCCTGCCGGCGCACCAGCCCTTGCGCTTCCAgg < 1:577994/150‑1 (MQ=255) aCAGCTCTACCCGCAGCTGGTTGGCGATGGTCTCGATCTGATCGATCAACGGCTTGGCCGGCGGGCACAGTACAATCTTCTTCGCCCGCCGATCCTCCAGCACCGCCTGCCGGCGCACCAGCCCTTGCGCTTCCAGGCTGTCGAGCAGAc > 2:518666/1‑150 (MQ=255) ccGCAGCTGGTTGGCGATGGTCTCGATCTGATCGATCAACGGCTTGGCCGGCGGGCACAGTACAATCTTCTTCGCCCGCCGATCCTCCAGCACCGCCTGCCGGCGCACCAGCCCTTGCGCTTCCAGGCTGTCGAGCAGACGCGCCAGGGt > 1:240109/1‑150 (MQ=255) cGATGGTCTCGATCTGATCGATCAACGGCTTGGCCGGCGGGCACAGTACAATCTTCTTCGCCCGCCGATCCTCCAGCACCGCCTGCCGGCGCACCAGCCCTTGCGCTTCCAGGCTGTCGAGCAGACGCGCCAGGGTCGGGCCTTCGACGc < 1:119764/150‑1 (MQ=255) ggtgcgccggcaggcggtgctggaggatCGGCGGGCACAGTACAATCTTCTTcgcccgcc < 2:398194‑M1/32‑1 (MQ=255) ggtgcgccggcaggcggtgctggaggatCGGCGGGCACAGTACAATCTTCTTcgcccgcc > 1:398194‑M1/29‑60 (MQ=255) tcGATCTGATCGATCAACGGCTTGGCCGGCGGGCACAGTACAATCTTCTTCGCCCGCCGATCCTCCAGCACCGCCTGCCGGCGCACCAGCCCTTGCGCTTCCAGGCTGTCGAGCAGACGCGCCAGGGTCGGGCCTTCGACGCCTACGctc > 1:97987/1‑150 (MQ=255) cGATCTGATCGATCAACGGCTTGGCCGGCGGGCACAGTACAATCTTCTTCGCCCGCCGATCCTCCAGCACCGCCTGCCGGCGCACCAGCCCTTGCGCTTCCAGGCTGTCGAGCAGACGCGCCAGGGTCGGGCCTTCGACGCCTACGctct > 1:335117/1‑150 (MQ=255) aaCGGCTTGGCCGGCGGGCACAGTACAATCTTCTTCGCCCGCCGATCCTCCAGCACCGCCTGCCGGCGCACCAGCCCTTGCGCTTCCAGGCTGTCGAGCAGACGCGCCAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGc > 1:473152/1‑150 (MQ=255) | GGGTGAGCTCAGGACTTTTCGAGGTTGGCCAGGATCTTGGCATGCACGCGCATACAGACCTGCAAGTCCGCCTCGTCCACGCCGGTAAACAGCTCTACCCGCAGCTGGTTGGCGATGGTCTCGATCTGATCGATCAACGGCTTGGCCGGCGGGCACAGTACAATCTTCTTCGCCCGCCGATCCTCCAGCACCGCCTGCCGGCGCACCAGCCCTTGCGCTTCCAGGCTGTCGAGCAGACGCGCCAGGGTCGGGCCTTCGACGCCTACGCTCTGGGCCAGCTCACGC > NC_002947/5133656‑5133940 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |