New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5739035 =	16 (0.590)	6 (0.240)	6/270	2.1	29.5%	intergenic (‑56/+101)	proY/hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
	?	NC_002947	5739114 =	14 (0.560)					intergenic (‑135/+22)	proY/hutH	proline (histidine) APC transporter/histidine ammonia‑lyase

TTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAA‑GGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5739192‑5739035 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcgaa‑gggCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCGGCACC  >  NC_002947/5739114‑5739253                                                                                                                                                                                                                                                                                                             TTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCGGTGGGAGCGGGCGTGCCC                                                                                                                                                       >  2:405981/1‑150                                                                                                CCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCG                                                                                   >  1:409780/1‑122                                                                                                CCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCG                                                                                   <  2:409780/122‑1                                                                                                     CCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGC                                                   >  1:136057/1‑150                                                                                                        ACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACA                                                             <  1:95647/136‑1                                                                                                        ACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACA                                                             >  2:95647/1‑136                                                                                                            AAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGCGCCCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGA                                           >  1:605554/1‑150                                                                                                                                                     CCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACATGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTCCCCTTGGCCAACAGGTCCACGGCCTTGTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCGGCACC  >  1:287868/1‑150                                                                                                                                                     CCGCGAA‑GGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCGGCACC  >  1:287858/1‑150                                                                                                                                                                                                                                                                                                             TTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAA‑GGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5739192‑5739035 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcgaa‑gggCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCGGCACC  >  NC_002947/5739114‑5739253

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.