New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5739035 =	16 (0.590)	6 (0.240)	6/270	2.1	29.5%	intergenic (‑56/+101)	proY/hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
	?	NC_002947	5739114 =	14 (0.560)					intergenic (‑135/+22)	proY/hutH	proline (histidine) APC transporter/histidine ammonia‑lyase

TTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCGGCACCTCACTGCGCA  >  NC_002947/5739000‑5739263                                                                                                                   |                                                                                                                                                      ttGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCa                                                                                                                    <  2:401139/150‑1 (MQ=255)       tCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCACCCCCGCGCCCCACCGGGATGGTGTTTTGAAACTACGTCGGTGGGGGCGGGCGCGCCCGCGAATGGCCGCCCCGCGGGCCCAGGGGGGGGAACGGCGTGGCAGTacac                                                                                                              >  1:422191/1‑150 (MQ=255)         gTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATTGTGTTTTTGACCTAGTTGTTTGGGTGCGGGCGCGCCCGCGAAGGGGCGCCCAGCGGGCCCAGGGGCGTTAAATGCTTTGCAGTAAAccc                                                                                                            >  2:203007/1‑150 (MQ=37)                                 aGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTa                                                                                    <  2:541159/150‑1 (MQ=255)                                            GGGCACGCCCGCTCCCACCGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCaa                                                                         >  2:405981‑M1/1‑150 (MQ=255)                                                    ccgctcccacagaagtaggtgcaaaacaccatcccctgtgggagcgggcgtgcccgcgaagggCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCg                                                                                             >  1:409780‑M2/64‑122 (MQ=255)                                                    ccgctcccacagaagtaggtgcaaaacaccatcccctgtgggagcgggcgtgcccgcgaagggCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCg                                                                                             <  2:409780‑M2/59‑1 (MQ=255)                                                    acGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCCGACTACCCTTGGCCAACAGGTCCa                                                                 >  2:280/2‑150 (MQ=255)                                                        cccacagaagtaggtgcaaaacaccatcccctgtgggagcgggcgtgcccgcgaaggggCTGCGCAGCAGCCCCCGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGc                                                             >  1:136057‑M2/60‑150 (MQ=255)                                                            acagaagtaggtgcaaaacaccatcccctgtgggagcgggcgtgcccgcgaagggCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACa                                                                       >  2:95647‑M2/56‑136 (MQ=255)                                                            acagaagtaggtgcaaaacaccatcccctgtgggagcgggcgtgcccgcgaagggCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACa                                                                       <  1:95647‑M2/81‑1 (MQ=255)                                                            acaGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCttt                                                         >  2:559641/1‑150 (MQ=255)                                                              cggggATGGTGTTTTGCACATACTTCTGTGGGTGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTc                                                       <  1:258313/149‑1 (MQ=255)                                                                gggATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGa                                                     >  2:195864/1‑150 (MQ=255)                                                                aagtaggtgcaaaacaccatcccctgtgggagcgggcgcgcccgcgaagggCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGa                                                     >  1:605554‑M2/52‑150 (MQ=255)                                                                         ttttGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGgcg                                            >  1:549225/1‑150 (MQ=255)                                                                                     ttCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAacggt                                >  1:252164/1‑150 (MQ=255)                                                                                     ttCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAacggt                                >  1:252154/1‑150 (MQ=255)                                                                                         gtgGGCGGGGCCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAacggtcacg                            <  1:203007/150‑1 (MQ=255)                                                                                             gAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCg                        >  1:361514/1‑150 (MQ=255)                                                                                               gCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTa                      <  1:549296/150‑1 (MQ=255)                                                                                                         ccgcgaagggCCGCCCAGCGGCCCCAGGGGCGTTACATGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTCCCCTTGGCCAACAGGTCCACGGCCTTGTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCGGCAcc            >  1:287868‑M2/11‑150 (MQ=255)                                                                                                         ccgcgaagggCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCGGCAcc            >  1:287858‑M2/11‑150 (MQ=255)                                                                                                                   ccgccCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCGGCACCTCACTGCGCa  >  1:274275/1‑150 (MQ=255)                                                                                                                   |                                                                                                                                                      TTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCGGCACCTCACTGCGCA  >  NC_002947/5739000‑5739263

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.