| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5739035 = | 16 (0.590) | 6 (0.240) | 6/270 | 2.1 | 29.5% | intergenic (‑56/+101) | proY/hutH | proline (histidine) APC transporter/histidine ammonia‑lyase |
| ? | NC_002947 | 5739114 = | 14 (0.560) | intergenic (‑135/+22) | proY/hutH | proline (histidine) APC transporter/histidine ammonia‑lyase | |||||
AGGCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCA‑GGGGGCTGCTGCGCAGCCCC‑TTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTA > NC_002947/5738894‑5739181 | aGGCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCA‑GGGGGCTGCTGCGCAGCCCC‑TTcgcg < 2:599120/150‑1 (MQ=255) ggtgccgcactacgaccgtgaccgtttcttcgcgccggatatcgacaaggccgtggacctgttggccaaggggagtctgaccggcttgctgccggcgggtgtactgccaagcatgtaacgcccctggggccgctgggcggCCC‑TTCGCgg > 1:287868‑M1/141‑150 (MQ=255) ggtgccgcactacgaccgtgaccgtttcttcgcgccggatatcgaaaaggccgtggacctgttggccaagggtagtctgaccggcttgctgccggcgggtgtactgccaagcctgtaacgcccctggggccgctgggcggCCC‑TTCGCgg > 1:287858‑M1/141‑150 (MQ=255) ggTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCA‑GGGGGCTGCTGCGCAGCCCC‑TTCGCGGGCAc < 2:228094/150‑1 (MQ=255) tGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCA‑GGGGGCTGCTGCGCAGCCCC‑TTCGCGGGCACGCCCGCTc < 2:94776/150‑1 (MQ=255) tGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCA‑GGGGGCTGCTGCGCAGCCCC‑TTCGCGGGCACGCCCGCTc < 2:94775/150‑1 (MQ=255) ggAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTAGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCA‑GGGGGCTGCTGCGCAGACCC‑TTCGCGGGCACGCCCGCTCCcac > 1:401139/1‑150 (MQ=255) gAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCA‑GGGGGCTGCTGCGCAGCCCC‑TTCGCGGGGACGCCCGCGCCCCCCggggg > 1:405981/1‑149 (MQ=255) cATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTGTGTGGTCGTGAGATTCA‑GGGGGCTGCTGCGCAGCCCC‑TTCGCGGGCACGCCCGCTCCCACAGGGGATGgtgt < 2:510212/150‑1 (MQ=255) gAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCA‑GGGGGCTGCTGCGCAGCCCC‑TTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGtttt < 1:144846/150‑1 (MQ=255) gATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCA‑GGAGGCTGCTGCGCAGCCCC‑TTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTGTTGCACCt > 2:549296/1‑150 (MQ=255) tcgaaaaggccgtggacctgttggccaagggtagtctgaccggcttgctgccggcgggtgtactgccaagcctgtaacgcccctggggccgctgggcggCCC‑TTCGCGGGCGCGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACtt > 1:605554‑M1/100‑150 (MQ=255) gccgtggacctgttggccaagggtagtctgaccggcttgctgccggcgggtgtactgccaagcctgtaacgccccgggggctgctgcgcagCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTggg > 1:136057‑M1/92‑150 (MQ=255) cTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGGATTGTTTTTGTGGTCGTGAGATTCA‑GGGGGCTGCTGCGCAGCCCC‑TTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACGTCTGTGGGAg > 2:258313/1‑150 (MQ=255) cTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGGCTGCTGCGCAGCCCC‑TTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGa < 2:204632/150‑1 (MQ=255) tgttggccaagggtagtctgaccggcttgctgccggcgggtgtactgccaagcctgtaacgcccctggggccgctgggcggCCC‑TTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCtgt < 1:95647‑M1/55‑1 (MQ=255) tgttggccaagggtagtctgaccggcttgctgccggcgggtgtactgccaagcctgtaacgcccctggggccgctgggcggCCC‑TTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCtgt > 2:95647‑M1/82‑136 (MQ=255) gagaCCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCA‑GGGGGCTGCTGCGCAGCCCC‑TTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCcgcg > 2:360716/1‑150 (MQ=255) cggcttgctgccggcgggtgtactgccaagcctgtaacgcccctggggccgctgggcggCCC‑TTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCgg < 2:409780‑M1/63‑1 (MQ=255) cggcttgctgccggcgggtgtactgccaagcctgtaacgcccctggggccgctgggcggCCC‑TTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCgg > 1:409780‑M1/60‑122 (MQ=255) ttGTGGTCGTGAGATTCA‑GGGGGCTGCTGCGCAGCCCC‑TTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCa < 2:401139/150‑1 (MQ=255) tCGTGAGATTCA‑GGGGGCTGCTGCGCAGCCCC‑TTCGCGGGCACCCCCGCGCCCCACCGGGATGGTGTTTTGAAACTACGTCGGTGGGGGCGGGCGCGCCCGCGAATGGCCGCCCCGCGGGCCCAGGGGGGGGAACGGCGTGGCAGTacac > 1:422191/1‑150 (MQ=255) gTGAGATTCA‑GGGGGCTGCTGCGCAGCCCC‑TTCGCGGGCACGCCCGCTCCCACAGGGGATTGTGTTTTTGACCTAGTTGTTTGGGTGCGGGCGCGCCCGCGAAGGGGCGCCCAGCGGGCCCAGGGGCGTTAAATGCTTTGCAGTAAAccc > 2:203007/1‑150 (MQ=37) aGCCCC‑TTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTa < 2:541159/150‑1 (MQ=255) | AGGCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCA‑GGGGGCTGCTGCGCAGCCCC‑TTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTA > NC_002947/5738894‑5739181 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |