New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1859742	27 (1.000)	7 (0.280)	5/270	2.4	19.0%	intergenic (+73/‑238)	PP_1658/PP_1659	hypothetical protein/hypothetical protein
	?	NC_002947	= 1859773	35 (1.410)					intergenic (+104/‑207)	PP_1658/PP_1659	hypothetical protein/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

AACAGCCATGTCGAGGAAACGGACGAAGACGACCCGTACGCGGCTTACAAGATCCCTGATGATCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTAGCCTCCAG  >  NC_002947/1859595‑1859890                                                                                                                                                    |                                                                                                                                                     aaCAGCCATGTCGAGGAAACGGACGAAGACGACCCGTACGCGGCTTACAAGATCCCTGATGATCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACgc                                                                                                                                                    >  2:134742‑M1/1‑148 (MQ=255)   cAGCCATGTCGAGGAAACGGACGAAGACGACCCGTACGCGGCTTACAAGATCCCTGATGATCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACccgc                                                                                                                                                  <  1:402134‑M1/150‑5 (MQ=255)   cAGCCATGTCGAGGAAACGGACGAAGACGACCCGTACGCGGCTTACAAGATCCCTGATGATCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACAcgc                                                                                                                                                  >  1:329713/1‑150 (MQ=255)   cAGCCATGTCGAGGAAACGGACGAAGACGACCCGTACGCGGCTTACAAGATCCCTGATGATCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACAcgc                                                                                                                                                  >  1:482919/1‑150 (MQ=255)   cAGCCATGTCGAGGAAACGGACGAAGACGACCCGTACGCGGCTTACAAGATCCCTGATGATCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACAcgc                                                                                                                                                  >  1:482900/1‑150 (MQ=255)        aTGTCGAGGAAACGGACGAAGACGACCCGTACGCGGCTTACAAGATCCCTGATGATCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGtt                                                                                                                                             <  1:1812/150‑1 (MQ=255)                      gACGAAGACGACCCGTACGCGGCTTACAAGATCCCTGATGATCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCt                                                                                                                               >  2:455476/1‑150 (MQ=255)                         gAAGACGACCCGTACGCGGCTTACAAGATCCCTGATGATCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGc                                                                                                                            >  2:588605/1‑150 (MQ=255)                                   cGTACGCGGCTTACAAGATCCCTGATGATCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCgtcgc                                                                                                                  <  2:463243‑M2/150‑6 (MQ=255)                                       cgcgGCTTACAAGATCCCTGATGATCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACgcaaggccagcgtcttctagagaacgcgcgtgtcgcgaaa                                                                                                              <  1:576193‑M1/150‑41 (MQ=255)                                       cgcgGCTTACAAGATCCCTGATGATCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCgtcgcgaaa                                                                                                              >  1:406710‑M2/1‑141 (MQ=255)                                           gCTTACAAGATCCCTGATGATCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGt                                                                                                          >  1:372591/1‑150 (MQ=255)                                               aCAAGATCCCTGATGATCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACgcaaggccagcgtcttctagagaacgcgcgtgtcgcgaaagggccgca                                                                                                      <  1:134742‑M1/150‑49 (MQ=255)                                                       ccTGATGATCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACgcaaggccagcgtcttctagagaacgcgcgtgtcgc                                                                                                                  <  1:445988‑M1/130‑37 (MQ=255)                                                       ccTGATGATCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACgcaaggccagcgtcttctagagaacgcgcgtgtcgc                                                                                                                  >  2:445988‑M1/1‑94 (MQ=255)                                                       ccTGATGATCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACgcaaggccagcgtcttctagagaacgcgcgtgtcgc                                                                                                                  >  2:445980‑M1/1‑94 (MQ=255)                                                       ccTGATGATCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACgcaaggccagcgtcttctagagaacgcgcgtgtcgc                                                                                                                  <  1:445980‑M1/130‑37 (MQ=255)                                                         tgatgaTCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGa                                                                                            >  1:546369/1‑150 (MQ=255)                                                               tCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGgc                                                                                      <  2:69815/150‑1 (MQ=255)                                                                     gtgGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGtt                                                                                >  1:687/1‑150 (MQ=255)                                                                      tgGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGttt                                                                               <  2:101587/150‑1 (MQ=255)                                                                              aCGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTg                                                                       <  1:427628/150‑1 (MQ=255)                                                                              aCGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTg                                                                       <  1:595220/150‑1 (MQ=255)                                                                              aCGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTg                                                                       <  1:427620/150‑1 (MQ=255)                                                                                gAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCa                                                                     >  1:556258/1‑150 (MQ=255)                                                                                          ccTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGACGCAGTTTGTCAGTTGCACTATCGTCtt                                                           <  1:603241/150‑1 (MQ=255)                                                                                            ttGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTgg                                                         >  2:243249/1‑150 (MQ=255)                                                                                                                       gaaaGGGCCGCAGAGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTa                              >  1:293810/4‑150 (MQ=255)                                                                                                                       cGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTa                              <  1:588605/150‑1 (MQ=255)                                                                                                                             gCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTc                        >  2:8270/1‑150 (MQ=255)                                                                                                                                gCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCAGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCAc                                                                    <  2:46452/103‑1 (MQ=255)                                                                                                                                gCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCAGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCAc                                                                    >  1:46452/1‑103 (MQ=255)                                                                                                                                 ctctGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGc                    <  2:556258/150‑1 (MQ=255)                                                                                                                                    tGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCgtcgcgaaagggccgcagagcggccctgcgatcttgaatgaaccgcattaacgccaaggcgggattttcgtgcttaccacatcagatcatcagggatcttgt                 <  1:134742‑M2/150‑103 (MQ=255)                                                                                                                                           cTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTa          >  1:381863/1‑150 (MQ=255)                                                                                                                                            tttCGCGACgcaaggccagcgtcttctagagaacgcgcgtgtcgcgaaagggccgcagagcggccctgcgatcttgaatgaaccgcattaacgccaaggcgggattttcgtgcttaccacatcagatcatcagggatcttgtaagccgcg         >  1:406710‑M1/1‑9 (MQ=255)                                                                                                                                            tttCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCgtcgcgaaagggccgcagagcggccctgcgatcttgaatgaaccgcattaacgccaaggcgggattttcgtgcttaccacatcagatcatcagggatcttgtaagccgcg         <  1:576193‑M2/150‑111 (MQ=255)                                                                                                                                            tttCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTAg         >  2:601821/1‑150 (MQ=255)                                                                                                                                                gcgACgcaaggccagcgtcttctagagaacgcgcgtgtcgcgaaagggccgcagagcggccctgcgatcttgaatgaaccgcattaacgccaaggcgggattttcgtgcttaccacatcagatcatcagggatcttgtaagccgcgtacg     <  2:463243‑M1/150‑146 (MQ=255)                                                                                                                                                gcgACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCgtcgcgaaagggccgcagagcggccctgcgatcttgaatgaaccgcattaacgccaaggcgggattttcgtgcttaccacatcagatcatcagg                         >  2:445980‑M2/1‑36 (MQ=255)                                                                                                                                                gcgACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCgtcgcgaaagggccgcagagcggccctgcgatcttgaatgaaccgcattaacgccaaggcgggattttcgtgcttaccacatcagatcatcagg                         >  2:445988‑M2/1‑36 (MQ=255)                                                                                                                                                gcgACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCgtcgcgaaagggccgcagagcggccctgcgatcttgaatgaaccgcattaacgccaaggcgggattttcgtgcttaccacatcagatcatcagg                         <  1:445988‑M2/130‑95 (MQ=255)                                                                                                                                                gcgACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCgtcgcgaaagggccgcagagcggccctgcgatcttgaatgaaccgcattaacgccaaggcgggattttcgtgcttaccacatcagatcatcagg                         <  1:445980‑M2/130‑95 (MQ=255)                                                                                                                                                   acacGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTAGCCTCCAg  >  1:71066/1‑150 (MQ=255)                                                                                                                                                   acacGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTAGCCTCCAg  >  1:71062/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                     AACAGCCATGTCGAGGAAACGGACGAAGACGACCCGTACGCGGCTTACAAGATCCCTGATGATCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTAGCCTCCAG  >  NC_002947/1859595‑1859890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.