New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1859742	27 (1.000)	7 (0.280)	5/270	2.4	19.0%	intergenic (+73/‑238)	PP_1658/PP_1659	hypothetical protein/hypothetical protein
	?	NC_002947	= 1859773	35 (1.410)					intergenic (+104/‑207)	PP_1658/PP_1659	hypothetical protein/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

CGTACGCGGCTTACAAGATCCCTGATGATCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTAGCCTCCAGCTTAGCGTCAGGGATAGCGCTGAACATTCGG  >  NC_002947/1859629‑1859921                                                                                                                                                 |                                                                                                                                                     cGTACGCGGCTTACAAGATCCCTGATGATCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCgtcgc                                                                                                                                                 <  2:463243‑M2/150‑6 (MQ=255)     cgcgGCTTACAAGATCCCTGATGATCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCgtcgcgaaa                                                                                                                                             >  1:406710‑M2/1‑141 (MQ=255)         gCTTACAAGATCCCTGATGATCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGt                                                                                                                                         >  1:372591/1‑150 (MQ=255)                       tgatgaTCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGa                                                                                                                           >  1:546369/1‑150 (MQ=255)                             tCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGgc                                                                                                                     <  2:69815/150‑1 (MQ=255)                                   gtgGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGtt                                                                                                               >  1:687/1‑150 (MQ=255)                                    tgGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGttt                                                                                                              <  2:101587/150‑1 (MQ=255)                                            aCGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTg                                                                                                      <  1:427620/150‑1 (MQ=255)                                            aCGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTg                                                                                                      <  1:427628/150‑1 (MQ=255)                                            aCGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTg                                                                                                      <  1:595220/150‑1 (MQ=255)                                              gAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCa                                                                                                    >  1:556258/1‑150 (MQ=255)                                                        ccTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGACGCAGTTTGTCAGTTGCACTATCGTCtt                                                                                          <  1:603241/150‑1 (MQ=255)                                                          ttGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTgg                                                                                        >  2:243249/1‑150 (MQ=255)                                                                                     gaaaGGGCCGCAGAGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTa                                                             >  1:293810/4‑150 (MQ=255)                                                                                     cGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTa                                                             <  1:588605/150‑1 (MQ=255)                                                                                           gCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTc                                                       >  2:8270/1‑150 (MQ=255)                                                                                              gCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCAGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCAc                                                                                                   >  1:46452/1‑103 (MQ=255)                                                                                              gCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCAGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCAc                                                                                                   <  2:46452/103‑1 (MQ=255)                                                                                               ctctGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGc                                                   <  2:556258/150‑1 (MQ=255)                                                                                                  tGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCgtcgcgaaagggccgcagagcggccctgcgatcttgaatgaaccgcattaacgccaaggcgggattttcgtgcttaccacatcagatcatcagggatcttgt                                                <  1:134742‑M2/150‑103 (MQ=255)                                                                                                         cTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTa                                         >  1:381863/1‑150 (MQ=255)                                                                                                          tttCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCgtcgcgaaagggccgcagagcggccctgcgatcttgaatgaaccgcattaacgccaaggcgggattttcgtgcttaccacatcagatcatcagggatcttgtaagccgcg                                        <  1:576193‑M2/150‑111 (MQ=255)                                                                                                          tttCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTAg                                        >  2:601821/1‑150 (MQ=255)                                                                                                              gcgACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCgtcgcgaaagggccgcagagcggccctgcgatcttgaatgaaccgcattaacgccaaggcgggattttcgtgcttaccacatcagatcatcagg                                                        <  1:445980‑M2/130‑95 (MQ=255)                                                                                                              gcgACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCgtcgcgaaagggccgcagagcggccctgcgatcttgaatgaaccgcattaacgccaaggcgggattttcgtgcttaccacatcagatcatcagg                                                        >  2:445980‑M2/1‑36 (MQ=255)                                                                                                              gcgACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCgtcgcgaaagggccgcagagcggccctgcgatcttgaatgaaccgcattaacgccaaggcgggattttcgtgcttaccacatcagatcatcagg                                                        >  2:445988‑M2/1‑36 (MQ=255)                                                                                                              gcgACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCgtcgcgaaagggccgcagagcggccctgcgatcttgaatgaaccgcattaacgccaaggcgggattttcgtgcttaccacatcagatcatcagg                                                        <  1:445988‑M2/130‑95 (MQ=255)                                                                                                                 acacGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTAGCCTCCAg                                 >  1:71062/1‑150 (MQ=255)                                                                                                                 acacGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTAGCCTCCAg                                 >  1:71066/1‑150 (MQ=255)                                                                                                                             tctAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTAGCCTCCAGCTTAGCGTCAgg                     >  1:606817/1‑150 (MQ=255)                                                                                                                             tctAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTAGCCTCCAGCTTAGCGTCAgg                     >  2:553420/1‑150 (MQ=255)                                                                                                                             tctAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTAGCCTCCAGCTTAGCGTCAgg                     >  2:553410/1‑150 (MQ=255)                                                                                                                             tctAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTAGCCTCCAGCTTAGCGTCAgg                     >  2:553393/1‑150 (MQ=255)                                                                                                                                 gaagaCGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTAGCCTCCAGCTTAGCGTCAGGGATa                 >  2:382588/1‑150 (MQ=255)                                                                                                                                 gaagaCGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTAGCCTCCAGCTTAGCGTCAGGGATa                 >  2:382584/1‑150 (MQ=255)                                                                                                                                 gaagaCGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTAGCCTCCAGCTTAGCGTCAGGGATa                 >  2:26365/1‑150 (MQ=255)                                                                                                                                          ggCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTAGCCTCCAGCTTAGCGTCAGGGATAGCGCTGAAc        >  2:438277/1‑150 (MQ=255)                                                                                                                                            ccTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTAGCCTCCAGCTTAGCGTCAGGGATAGCGCTGAACAt      >  2:312373/1‑150 (MQ=255)                                                                                                                                             cTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTAGCCTCCAGCTTAGCGTCAGGGATAGCGCTGAACAtt     <  2:307786/150‑1 (MQ=255)                                                                                                                                              ttGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTAGCCTCCAGCTTAGCGTCAGGGATAGCGCTGAACATTc    <  2:546369/150‑1 (MQ=255)                                                                                                                                                gCgtcgcgaaagggccgcagagcggccctgcgatcttgaatgaaccgcattaacgccaaggcgggattttcgtgcttaccacatcagatcatcagggatcttgtaagccgcgtacgggtcgtcttcgtccgtttcctcgacatggctgtt  >  2:134742‑M2/1‑2 (MQ=255)                                                                                                                                                gCGTCGCGACAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTAGCCTCCAGCTTAGCGTCAGGGATAGCGCTGAACATTCgg  <  2:482900/150‑1 (MQ=255)                                                                                                                                                gCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTAGCCTCCAGCTTAGCGTCAGGGATAGCGCTGAACATTCgg  <  2:482919/150‑1 (MQ=255)                                                                                                                                                gCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTAGCCTCCAGCTTAGCGTCAGGGATAGCGCTGAACATTCgg  <  2:329713/150‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     CGTACGCGGCTTACAAGATCCCTGATGATCTGATGTGGTAAGCACGAAAATCCCGCCTTGGCGTTAATGCGGTTCATTCAAGATCGCAGGGCCGCTCTGCGGCCCTTTCGCGACACGCGCGTTCTCTAGAAGACGCTGGCCTTGCGTCGCGAAAGGGTTCGTCGCTCACCGAACCGGCGCAGTTTGTCAGTTGCACTATCGTCTTGGTTCCCTCCGTTCGTCGGACATTTCTTAGGGTTCCGGCACAACGGCTAGCCTCCAGCTTAGCGTCAGGGATAGCGCTGAACATTCGG  >  NC_002947/1859629‑1859921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.