New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4164076 =	23 (0.850)	7 (0.290)	4/262	2.7	31.5%	intergenic (+31/‑178)	PP_3661/PP_3662	membrane protein/hypothetical protein
	?	NC_002947	4164136 =	10 (0.410)					intergenic (+91/‑118)	PP_3661/PP_3662	membrane protein/hypothetical protein

CTTCAGCCAGATTCGCCAGGCTGGGCCACGGGCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAAAG  >  NC_002947/4163928‑4164221                                                                                                                                                     |                                                                                                                                                  ggatgcattgatgacatggcgttgaggcatctaagtctttcctgtgcgggtaaaacatccttctttgacaccaccataccgagaaatgtggacggcaacgaggggggctgtgaaaaaccttgagaccgagctgcctgcttcgcgggtgaa                                                                                                                                                  <  2:125367‑M1/2‑1 (MQ=255) ggatgcattgatgacatggcgttgaggcatctaagtctttcctgtgcgggtaaaacatccttctttgacaccaccataccgagaaatgtggacggcaacgaggggggctgtgaaaaaccttgagaccgagctgcctgcttcgcgggtgaa                                                                                                                                                  <  1:456997‑M1/2‑1 (MQ=255)         aGATTCGCCAGGCTGGGCCACGGGCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTcc                                                                                                                                          <  1:4799/150‑1 (MQ=255)               gCCAGGCTGGGCCACGGGCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAAACCCCGCCAACaag                                                                                                                                    >  2:456997/1‑148 (MQ=255)                ccAGGCTGGGCCACGGGCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAggt                                                                                                                                   >  1:485459/1‑150 (MQ=255)                    gCTGGGCCACGGGCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAggtgggt                                                                                                                               <  1:446563/150‑1 (MQ=255)                           cACGGGCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGGGGCTTGGCGGGGAAACCCCCCACAAAAGGTGGGTGGTGgcc                                                                                                                        >  2:427607/1‑150 (MQ=255)                               ggCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGaa                                                                                                                    <  1:480307/150‑1 (MQ=255)                               ggCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGaa                                                                                                                    <  1:480301/150‑1 (MQ=255)                                       ccACCGGTGCGATCCTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCaa                                                                                                            <  1:231610/150‑1 (MQ=255)                                              gcgggtaaaacatccttctttgacaccaccataccgagaaatgtggacggcaacgaggggggctgtgaaaaaccttgagaccgagctgcctgcttcgcgggtgAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCt                                                                                                     >  1:10772‑M1/104‑150 (MQ=255)                                              gcgggtaaaacatccttctttgacaccaccataccgagaaatgtggacggcaacgaggggggctgtgaaaaaccttgagaccgagctgcctgcttcgcgggtgAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCt                                                                                                     >  1:608182‑M1/104‑150 (MQ=255)                                                gggtaaaacatccttctttgacaccaccataccgagaaatgtggacggcaacgaggggggctgtgaaaaaccttgagaccgagctggctgcttcgcgggtaAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGt                                                                                                   >  1:43986‑M1/102‑150 (MQ=255)                                                gggtaaaacatccttctttgacaccaccataccgagaaatgtggacggcaacgaggggggctgtgaaaaaccttgagaccgagctggctgcttcgcgggtaAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGt                                                                                                   >  1:265563‑M1/102‑150 (MQ=255)                                                gggtaaaacatccttctttgacaccaccataccgagaaatgtggacggcaacgaggggggctgtgaaaaaccttgagaccgagctggctgcttcgcgggtaAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGt                                                                                                   >  1:497677‑M1/102‑150 (MQ=255)                                                 ggtaaaacatccttctttgacaccaccataccgagaaatgtggacggcaacgaggggggctgtgaaaaaccttgagaccgagtcggctgcttcgcgggtaAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTa                                                                                                  >  1:510684‑M1/101‑150 (MQ=255)                                                 gATCCTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGCGGGTGCAGAAGCTGTAGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTa                                                                                                  <  2:332863/150‑1 (MQ=255)                                                     cTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTAGCCGGGAAAACCCCGCCAACAGGTGGGTGCGGCCCGGAAGACGGCCAGGCCCCCGTAgggg                                                                                              >  2:250800/1‑148 (MQ=255)                                                        aaCCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCgg                                                                                           <  1:253184/150‑1 (MQ=255)                                                          tccttctttgacaccaccataccgagaaatgtggacggcaacgaggggggctgtgaaaaaccttgagaccgagctgcctgcttcgcgggtgAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGt                                                                                         >  2:365149‑M1/92‑150 (MQ=255)                                                          ccTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGt                                                                                         <  2:517670/150‑1 (MQ=255)                                                                     ttGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGaa                                                                              <  1:166890/150‑1 (MQ=255)                                                                     ttGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGaa                                                                              <  1:33321/150‑1 (MQ=255)                                                                          ggggggCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAgcagg                                                                         <  2:45455/150‑1 (MQ=255)                                                                           gggggCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGGCCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAgcaggc                                                                        <  1:239406/150‑1 (MQ=255)                                                                                             tGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGttt                                                      <  2:298701/150‑1 (MQ=255)                                                                                                          gCTGTTGGGCTGACTGGAGACCGAGTCGGGGTCTTGCCGGGTGAAACCGCACCAAAACGTTGGGGGTGCCCAGAAGACGGCAACGCCCCAGTATGAGCCGGTTCACCCCCCAACAAGGCACCTACGTGAAAACGTTTTTAAAAAcccccc                                         >  2:586073/1‑150 (MQ=255)                                                                                                            tGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGc                                                                                                                                             <  2:194493/48‑1 (MQ=255)                                                                                                            tGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGc                                                                                                                                             >  1:194493/1‑48 (MQ=255)                                                                                                                               cGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACCGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTtctc                    <  1:186945/150‑1 (MQ=255)                                                                                                                                    cGGCTGCTTCGCGGGTAAACCCGCTCCTACCGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTAt               <  1:250800/150‑1 (MQ=255)                                                                                                                                                 ggTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAaag  >  1:204053/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                  CTTCAGCCAGATTCGCCAGGCTGGGCCACGGGCGCTGGCCACCGGTGCGATCCTCAACCTGTGGCTGGTTGGCGGGGGGCTGGCGATTACCCTGGGGGTGCAGAAGCTGTTGGGCTGACTGGAGACCGAGTCGGCTGCTTCGCGGGTAAACCCGCTCCTACAGGTGGGTGCTGCCCTGAAGACGGCAAGGCCCCTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAGCTCGGTCTCAAGGTTTTTCACAGCCCCCCTCGTTGCCGTCCACATTTCTCGGTATGGTGGTGTCAAAG  >  NC_002947/4163928‑4164221

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.