| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 353381 | 15 (0.900) | 4 (0.250) | 4/278 | 1.6 | 21.3% | coding (952/1179 nt) | cbcV | choline/betaine/carnitine ABC transporter ATP binding protein |
| ? | NC_002947 | = 353398 | 15 (0.930) | coding (935/1179 nt) | cbcV | choline/betaine/carnitine ABC transporter ATP binding protein | |||||
TGCAGCACCAGCTTGTTGCCGGTTTGATAACGAATCTGCAGTGCCTCACGCATGCCGATGTCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTT‑‑‑‑‑‑GGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/353230‑353381‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgGCGCGCTCAAGCGTGCACGCCAAGGCCA < NC_002947/353398‑353371 TGCAGCACCAGCTTGTTGCCGGTTTGATAACGAATCTGCAGTGCCTCACGCATGCCGATGTCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTT‑‑‑‑‑‑GG > 1:20344/1‑150TGCAGCACCAGCTTGTTGCCGGTTTGATAACGAATCTGCAGTGCCTCACGCATGCCGATGTCGGCGTGCACAACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATGTCTGCATGTCCAGCCCGTTCTGGCCTT‑‑‑‑‑‑GG > 1:286489/1‑150 TCTGCAGTGCCTCACGCATGCCGATGTCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGAAGGCGGCGCGCTCAAGCGTGCACGCCAAGGC < 2:254884/150‑1 TGCAGTGCCTCACGCATGCCGATGTCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGACCTTGGCGAAGGCGGCGCGCTCAAGCGTGCACGCCAAGGCCA < 2:287387/150‑1 TCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTT‑‑‑‑‑‑GGCGGCGCGCTCAAGCGTGCACGCCAA > 1:98688/1‑88 TCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTT‑‑‑‑‑‑GGCGGCGCGCTCAAGCGTGCACGCCAA < 2:98688/88‑1 TGCAGCACCAGCTTGTTGCCGGTTTGATAACGAATCTGCAGTGCCTCACGCATGCCGATGTCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTT‑‑‑‑‑‑GGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/353230‑353381‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgGCGCGCTCAAGCGTGCACGCCAAGGCCA < NC_002947/353398‑353371 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |