New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3124809 =	15 (0.900)	5 (0.310)	3/274	1.8	25.4%	coding (279/888 nt)	PP_2740	MerR family transcriptional regulator
	?	NC_002947	3124830 =	15 (0.940)					coding (300/888 nt)	PP_2740	MerR family transcriptional regulator

GGAAGCGCGCGCAACGGCGGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3124833‑3124809 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTCACACTTTTGCCAAAGGCCACGGTGCTGCGGGACGTGCTGATGCCGGTTTGGCATGACCTGGCTTCAGGTACTGCGCCAGGCCAGCGTAGCCAATGG  >  NC_002947/3124830‑3124977                                                                                                                                                                               GGAAGCGCGCGCAACGGCGGCGCGCTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTCACA                                                                                               >  1:303656/1‑80 GGAAGCGCGCGCAACGGCGGCGCGCTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTCACA                                                                                               >  1:303660/1‑80 GGAAGCGCGCGCAACGGCGGCGCGCTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTCACA                                                                                               <  2:303656/80‑1 GGAAGCGCGCGCAACGGCGGCGCGCTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTCACA                                                                                               <  2:303660/80‑1    AGCGCGCGCAACGGCGGCGCGCTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTCACACTTTTGCCAAAGGCCACGGTGCTGCGGGACGTGCTGATGCCGGTTTGGCATGACCTGGCTTCAGGTACTGCGC                      >  2:76914/1‑150                        GCTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTCACACTTTTGCCAAAGGCCACGGTGCTGCGGGACGTGCTGATGCCGGTTTGGCATGACCTGGCTTCAGGTACTGCGCCAGGCCAGCGTAGCCAATGG  <  2:178873/150‑1                                                                                                                                                                               GGAAGCGCGCGCAACGGCGGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3124833‑3124809 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTCACACTTTTGCCAAAGGCCACGGTGCTGCGGGACGTGCTGATGCCGGTTTGGCATGACCTGGCTTCAGGTACTGCGCCAGGCCAGCGTAGCCAATGG  >  NC_002947/3124830‑3124977

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.