New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3124809 =	15 (0.900)	5 (0.310)	3/274	1.8	25.4%	coding (279/888 nt)	PP_2740	MerR family transcriptional regulator
	?	NC_002947	3124830 =	15 (0.940)					coding (300/888 nt)	PP_2740	MerR family transcriptional regulator

CAGGATGTGCAGCGCATACGTGACATCTTGCGCTGGACCGCCAACGGCCTGCCCATCAGCAAGGTTGGCGACAGGCTCGCCGGCCAGCCTGAGGCGCCTGTGCAGCAGCCCTCGGCCTTTGACGACTGGCGCGCCGCCGTTGCGCGCGCTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTCACACTTTTGCCAAAGGCCACGGTGCTGCGGGACGTGCTGATGCCGGTTTGGCATGACCTGGCTTCAGGTACTGCGCCAGGCCAGCGTAGCCAATGG  >  NC_002947/3124681‑3124977                                                                                                                                                      |                                                                                                                                                    gcgcagtacctgaagccaggtcatgccaaaccggcatcagcacgtcccgcagcaccgtggcctttggcaaaagtgtgaacagctgtccatggatcgcttccagcgcctgcgcatcgaatgccctggaaGCGCGCCGCCGTTGCGCGCGCt                                                                                                                                                     >  2:76914‑M1/129‑150 (MQ=255)            gcgcATACGTGACATCTTGCGCTGGACCGCCAACGGCCTGCCCATCAGCAAGGTTGGCGACAGGCTCGCCGGCCAGCCTGAGGCGCCTGTGCAGCAGCCCTCGGCCTTTGACGACTGGCGCGCCGCCGTTGCGCGCGCTTCCAGGGCAtt                                                                                                                                          <  1:191864/150‑1 (MQ=255)                                       cGCCAACGGCCTGCCCATCAGCAAGGTTGGCGACAGGCTCGCCGGCCAGCCTGAGGCGCCTGTGCAGCAGCCCTCGGCCTTTGACGACTGGCGCGCCGCCGTTGCGCGCGCTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCa                                                                                                               >  2:121676/1‑150 (MQ=255)                                         ccAACGGCCTGCCCATCAGCAAGGTTGGCGACAGGCTCGCCGGCCAGCCTGAGGCGCCTGTGCAGCAGCCCTCGGCCTTTGACGACTGGCGCGCCGCCGTTGCGCGCGCTTCCAGGGCATTCGa                                                                                                                                       >  1:62675/1‑124 (MQ=255)                                         ccAACGGCCTGCCCATCAGCAAGGTTGGCGACAGGCTCGCCGGCCAGCCTGAGGCGCCTGTGCAGCAGCCCTCGGCCTTTGACGACTGGCGCGCCGCCGTTGCGCGCGCTTCCAGGGCATTCGa                                                                                                                                       <  2:62675/124‑1 (MQ=255)                                                     ccATCAGCAAGGTTGGCGACAGGCTCGCCGGCCAGCCTGAGGCGCCTGTGCAGCAGCCCTCGGCCTTTGACGACTGGCGCGCCGCCGTTGCGCGCGCTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTca                                                                                                 <  1:363329/150‑1 (MQ=255)                                                          aGCAAGGTTGGCGACAGGCTCGCCGGCCAGCCTGAGGCGCCTGTGCAGCAGCCCTCGGCCTTTGACGACTGGCGCGCCGCCGTTGCGCGCGCTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTCACACtt                                                                                            >  1:224430/1‑150 (MQ=255)                                                              aGGTTGGCGACAGGCTCGCCGGCCAGCCTGAGGCGCCTGTGCAGCAGCCCTCGGCCTTTGACGACTGGCGCGCCGCCGTTGCGCGCGCTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTCACACTTTTGc                                                                                        <  1:287422/150‑1 (MQ=255)                                                                 ttGGCGACAGGCTCGCCGGCCAGCCTGAGGCGCCTGTGCAGCAGCCCTCGGCCTTTGACGACTGGCGCGCCGCCGTTGCGCGCGCTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTCACACTTTTGCCaa                                                                                     >  2:21489/1‑150 (MQ=255)                                                                          tgtgaacagctgtccatggatcgcttccagcgcctgcgcatcgaatgccctggaaGCGCGCCGCCGTTGCGCGCGCTTcc                                                                                                                                                  >  1:303656‑M1/56‑80 (MQ=255)                                                                          tgtgaacagctgtccatggatcgcttccagcgcctgcgcatcgaatgccctggaaGCGCGCCGCCGTTGCGCGCGCTTcc                                                                                                                                                  >  1:303660‑M1/56‑80 (MQ=255)                                                                          tgtgaacagctgtccatggatcgcttccagcgcctgcgcatcgaatgccctggaaGCGCGCCGCCGTTGCGCGCGCTTcc                                                                                                                                                  <  2:303660‑M1/25‑1 (MQ=255)                                                                          tgtgaacagctgtccatggatcgcttccagcgcctgcgcatcgaatgccctggaaGCGCGCCGCCGTTGCGCGCGCTTcc                                                                                                                                                  <  2:303656‑M1/25‑1 (MQ=255)                                                                                   gCCAGCCTGAGGCGCCTGTGCAGCAGCCCTCGGCCTTTGACGACTGGCGCGCCGCCGTTGCGCGCGCTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTCACACTTTTGCCAAAGGCCACGGTGCTGCggg                                                                   <  1:184528/150‑1 (MQ=255)                                                                                      aGCCTGAGGCGCCTGTGCAGCAGCCCTCGGCCTTTGACGACTGGCGCGCCGCCGTTGCGCGCGCTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTCACACTTTTGCCAAAGGCCACGGTGCTGCGGGACg                                                                <  2:61326/150‑1 (MQ=255)                                                                                      aGCCTGAGGCGCCTGTGCAGCAGCCCTCGGCCTTTGACGACTGGCGCGCCGCCGTTGCGCGCGCTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTCACACTTTTGCCAAAGGCCACGGTGCTGCGGGACg                                                                <  2:61321/150‑1 (MQ=255)                                                                                         cTGAGGCGCCTGTGCAGCAGCCCTCGGCCTTTGACGACTGGCGCGCCGCCGTTGCGCGCGCTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTCACACTTTTGCCAAAGGCCACGGTGCTGCGGGACGTGc                                                             >  2:370332/1‑150 (MQ=255)                                                                                                                             ggaagcgcgcgcaacggcggcgcgcTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTcaca                                                                                               <  2:303656‑M2/55‑1 (MQ=255)                                                                                                                             ggaagcgcgcgcaacggcggcgcgcTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTcaca                                                                                               >  1:303660‑M2/26‑80 (MQ=255)                                                                                                                             ggaagcgcgcgcaacggcggcgcgcTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTcaca                                                                                               <  2:303660‑M2/55‑1 (MQ=255)                                                                                                                             ggaagcgcgcgcaacggcggcgcgcTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTcaca                                                                                               >  1:303656‑M2/26‑80 (MQ=255)                                                                                                                               tGGCGCGCCGCCGTTGCGCGCGCTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTCACACTTTTGCCAAAGGCCACGGTGCTGCGGGACGTGCTGATGCCGGTTTGGCATGACCTGGCTTCAGGTACTgcg                       >  1:95563/1‑150 (MQ=255)                                                                                                                                agcgcgcgcaacggcggcgcgcTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTCACACTTTTGCCAAAGGCCACGGTGCTGCGGGACGTGCTGATGCCGGTTTGGCATGACCTGGCTTCAGGTACTgcgc                      >  2:76914‑M2/23‑150 (MQ=255)                                                                                                                                            ttGCGCGCGCTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTCACACTTTTGCCAAAGGCCACGGTGCTGCGGGACGTGCTGATGCCGGTTTGGCATGACCTGGCTTCAGGTACTGCGCCAGGCCAGCGTa          <  2:135682/150‑1 (MQ=255)                                                                                                                                            ttGCGCGCGCTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTCACACTTTTGCCAAAGGCCACGGTGCTGCGGGACGTGCTGATGCCGGTTTGGCATGACCTGGCTTCAGGTACTGCGCCAGGCCAGCGTa          <  1:121676/150‑1 (MQ=255)                                                                                                                                                    gcTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTCACACTTTTGCCAAAGGCCACGGTGCTGCGGGACGTGCTGATGCCGGTTTGGCATGACCTGGCTTCAGGTACTGCGCCAGGCCAGCGTAGCCAATgg  <  2:178873‑M2/148‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                    CAGGATGTGCAGCGCATACGTGACATCTTGCGCTGGACCGCCAACGGCCTGCCCATCAGCAAGGTTGGCGACAGGCTCGCCGGCCAGCCTGAGGCGCCTGTGCAGCAGCCCTCGGCCTTTGACGACTGGCGCGCCGCCGTTGCGCGCGCTTCCAGGGCATTCGATGCGCAGGCGCTGGAAGCGATCCATGGACAGCTGTTCACACTTTTGCCAAAGGCCACGGTGCTGCGGGACGTGCTGATGCCGGTTTGGCATGACCTGGCTTCAGGTACTGCGCCAGGCCAGCGTAGCCAATGG  >  NC_002947/3124681‑3124977

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.