New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6174998 =	7 (0.420)	3 (0.180)	3/284	1.9	27.3%	coding (62/777 nt)	PP_5410	DeoR family transcriptional regulator
	?	NC_002947	6175017 =	9 (0.540)					coding (43/777 nt)	PP_5410	DeoR family transcriptional regulator

TCCACAGGTCAGCGACAGCTTGACGAATCGCGCGTCTTAGGTTTTGATTGCAACCATTAACTTTCGAATCGAAACTTAAACGCACATGTCGAAACGAAACACACCACAACGGCGACACAATATTCTGGCTCTGCTCAGCGAGCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6175144‑6174998 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAA  >  NC_002947/6175017‑6175101                                                                                                                                                                                                                                          TCCACAGGTCAGCGACAGCTTGACGAATCGCGCGTCTTAGGTTTTGATTGCAACCATTAACTTTCGAATCGAAACTTAAACGCACATGTCGAAACGAAACACACCACAACGGCGACACAATATTCTGGCTCTGCTCAGCGAGCAGGGCCA                                                                                    <  2:86152/150‑1                                                                                                                  GACACAATATTCTGGCTCTGCTCAGCGAGCAGGGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAA  <  1:79353/119‑1                                                                                                                  GACACAATATTCTGGCTCTGCTCAGCGAGCAGGGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAA  >  2:79353/1‑119                                                                                                                                                                                                                                          TCCACAGGTCAGCGACAGCTTGACGAATCGCGCGTCTTAGGTTTTGATTGCAACCATTAACTTTCGAATCGAAACTTAAACGCACATGTCGAAACGAAACACACCACAACGGCGACACAATATTCTGGCTCTGCTCAGCGAGCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6175144‑6174998 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAA  >  NC_002947/6175017‑6175101

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.