| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6174998 = | 7 (0.420) | 3 (0.180) | 3/284 | 1.9 | 27.3% | coding (62/777 nt) | PP_5410 | DeoR family transcriptional regulator |
| ? | NC_002947 | 6175017 = | 9 (0.540) | coding (43/777 nt) | PP_5410 | DeoR family transcriptional regulator | |||||
GCGGTACCGGCACAGCACCACCGTAGCGGCGTAACAACAAGCCGTTGGTTTCCAAGGCGGCGAGGTCTTTGCGAATGGTCACTTCCGAGGTGGCGAAACGCTTGGCCAACGCGTCCACACTTACCTCACCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTGTGGATTGTTTGC > NC_002947/6174870‑6175152 | tccacaggtcagcgacagcttgacgaatcgcgcgtcttaggttttgattgcaaccattaactttcgaatcgaaacttaaacgcacatgtcgaaacgaaacacaccacaacggcgacacaatattctggctctgctcagcgagcagggCCa < 2:86152‑M2/3‑1 (MQ=255) tAACAACAAGCCGTTGGTTTCCAAGGCGGCGAGGTCTTTGCGAATGGTCACTTCCGAGGTGGCGAAACGCTTGGCCAACGCGTCCACACTTACCTCACCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTgtttcg > 2:248712/1‑150 (MQ=255) acaaGCCGTTGGTTTCCAAGGCGGCGAGGTCTTTGCGAATGGTCACTTCCGAGGTGGCGAAACGCTTGGCCAACGCGTCCACACTTACCTCACCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGtttcgtttcg > 1:155755/1‑150 (MQ=255) cGTTGGTTTCCAAGGCGGCGAGGTCTTTGCGAATGGTCACTTCCGAGGTGGCGAAACGCTTGGCCAACGCGTCCACACTTACCTCACCCTGCTCGCTGAGCAGAGCCAGAATAGTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACAtgt < 1:323338/150‑1 (MQ=255) ttgattgcaaccattaactttcgaatcgaaacttaaacgcacatgtcgaaacgaaacacaccacaacggcgacacaatattctggCCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTc < 1:79353‑M1/34‑1 (MQ=255) ttgattgcaaccattaactttcgaatcgaaacttaaacgcacatgtcgaaacgaaacacaccacaacggcgacacaatattctggCCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTc > 2:79353‑M1/86‑119 (MQ=255) gcggcgAGGTCTTTGCGAATGGTCACGTCCGAGGTGGCGAAACGCTTGGCCAACGCGTCCACACTTACCTCACCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTttcg > 2:51903/1‑150 (MQ=255) cgAGGTCTTTGCGAATGGTCACTTCCGAGGTGGCGAAACGCTTGGCCAACGCGTCCACACTTACCTCACCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTttcgattc < 1:192834/150‑1 (MQ=255) cgAGGTCTTTGCGAATGGTCACTTCCGAGGTGGCGAAACGCTTGGCCAACGCGTCCACACTTACCTCACCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGGGGTGTGTTTCGTTTCGACATGTGCGTGTAAGTttcgattc > 1:108693/1‑150 (MQ=255) gAATGGTCACTTCCGAGGTGGCGAAACGCTTGGCCAACGCGTCCACACTTACCTCACCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATgg > 2:62523/1‑150 (MQ=255) gacacaatattctggctctgctcagcgagcagggCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCaa < 1:79353‑M2/85‑1 (MQ=255) gacacaatattctggctctgctcagcgagcagggCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCaa > 2:79353‑M2/35‑119 (MQ=255) tggCCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTGTGGa < 2:86152‑M1/147‑1 (MQ=255) ccTGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTGTGGATTGt > 1:100043/1‑150 (MQ=255) cTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTGTGGATTGTTTGc > 1:191009/1‑150 (MQ=255) | GCGGTACCGGCACAGCACCACCGTAGCGGCGTAACAACAAGCCGTTGGTTTCCAAGGCGGCGAGGTCTTTGCGAATGGTCACTTCCGAGGTGGCGAAACGCTTGGCCAACGCGTCCACACTTACCTCACCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTGTGGATTGTTTGC > NC_002947/6174870‑6175152 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |