New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6174998 =	7 (0.420)	3 (0.180)	3/284	1.9	27.3%	coding (62/777 nt)	PP_5410	DeoR family transcriptional regulator
	?	NC_002947	6175017 =	9 (0.540)					coding (43/777 nt)	PP_5410	DeoR family transcriptional regulator

TAACAACAAGCCGTTGGTTTCCAAGGCGGCGAGGTCTTTGCGAATGGTCACTTCCGAGGTGGCGAAACGCTTGGCCAACGCGTCCACACTTACCTCACCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTGTGGA  >  NC_002947/6174901‑6175144                                                                                                  |                                                                                                                                                   tAACAACAAGCCGTTGGTTTCCAAGGCGGCGAGGTCTTTGCGAATGGTCACTTCCGAGGTGGCGAAACGCTTGGCCAACGCGTCCACACTTACCTCACCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTgtttcg                                                                                                >  2:248712/1‑150 (MQ=255)      acaaGCCGTTGGTTTCCAAGGCGGCGAGGTCTTTGCGAATGGTCACTTCCGAGGTGGCGAAACGCTTGGCCAACGCGTCCACACTTACCTCACCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGtttcgtttcg                                                                                           >  1:155755/1‑150 (MQ=255)            cGTTGGTTTCCAAGGCGGCGAGGTCTTTGCGAATGGTCACTTCCGAGGTGGCGAAACGCTTGGCCAACGCGTCCACACTTACCTCACCCTGCTCGCTGAGCAGAGCCAGAATAGTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACAtgt                                                                                     <  1:323338/150‑1 (MQ=255)             ttgattgcaaccattaactttcgaatcgaaacttaaacgcacatgtcgaaacgaaacacaccacaacggcgacacaatattctggCCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTc                                                                                                                   <  1:79353‑M1/34‑1 (MQ=255)             ttgattgcaaccattaactttcgaatcgaaacttaaacgcacatgtcgaaacgaaacacaccacaacggcgacacaatattctggCCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTc                                                                                                                   >  2:79353‑M1/86‑119 (MQ=255)                          gcggcgAGGTCTTTGCGAATGGTCACGTCCGAGGTGGCGAAACGCTTGGCCAACGCGTCCACACTTACCTCACCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTttcg                                                                       >  2:51903/1‑150 (MQ=255)                              cgAGGTCTTTGCGAATGGTCACTTCCGAGGTGGCGAAACGCTTGGCCAACGCGTCCACACTTACCTCACCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTttcgattc                                                                   <  1:192834/150‑1 (MQ=255)                              cgAGGTCTTTGCGAATGGTCACTTCCGAGGTGGCGAAACGCTTGGCCAACGCGTCCACACTTACCTCACCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGGGGTGTGTTTCGTTTCGACATGTGCGTGTAAGTttcgattc                                                                   >  1:108693/1‑150 (MQ=255)                                          gAATGGTCACTTCCGAGGTGGCGAAACGCTTGGCCAACGCGTCCACACTTACCTCACCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATgg                                                       >  2:62523/1‑150 (MQ=255)                                                                                               tggCCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTGTGGa  <  2:86152‑M1/147‑1 (MQ=255)                                                                                                  |                                                                                                                                                   TAACAACAAGCCGTTGGTTTCCAAGGCGGCGAGGTCTTTGCGAATGGTCACTTCCGAGGTGGCGAAACGCTTGGCCAACGCGTCCACACTTACCTCACCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTGTGGA  >  NC_002947/6174901‑6175144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.