| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 139996 = | 12 (0.720) | 3 (0.190) | 3/276 | 1.8 | 21.0% | coding (508/1782 nt) | kinB | alginate biosynthesis sensor protein KinB |
| ? | NC_002947 | 140016 = | 11 (0.680) | coding (488/1782 nt) | kinB | alginate biosynthesis sensor protein KinB | |||||
ATCGAAATTGCCCTTGCCCAACTGGTCGGCCGCCTTGGCCAAGGCTTCGATCGGCTGGCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCATGCTGCGAGCGGGTGT > NC_002947/139859‑140140 | aTCGAAATTGCCCTTGCCCAACTGGTCGGCCGCCTTGGCCAAGGCTTCGATCGGCTGGCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCAGCAATgc > 1:151389/1‑150 (MQ=255) gctcgcagcatgggtgtcgatcagcctcttggggccgcgttcaatcaggtgcgcaccgacctcatcgattcccacaagcaggcattggacctgattacccgtagcgaggaacgcaccacTGACCAGCAATGCGCGGTCACGGGTGCGTTc > 1:33661‑M1/120‑150 (MQ=255) atgggtgtcgatcagcctcttggggccgcgttcaatcaggtgcgcaccgacctcatcgattcccacaagcaggcattggacctgattacccgtagcgaggaacgcacccgTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTc > 1:373759‑M1/111‑144 (MQ=255) atgggtgtcgatcagcctcttggggccgcgttcaatcaggtgcgcaccgacctcatcgattcccacaagcaggcattggacctgattacccgtagcgaggaacgcacccgTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTc < 2:373759‑M1/34‑1 (MQ=255) ttGGCCAAGGCTTCGATCGGCTGGCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATc > 2:178033/1‑150 (MQ=255) cGATCGGCTGGCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCt < 1:181665/150‑1 (MQ=255) gATCGGCTGGCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTg > 2:343838/1‑150 (MQ=255) gCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGa > 2:194815/1‑150 (MQ=255) aaGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAAcgcg < 1:194815/150‑1 (MQ=255) aGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCgg < 1:371632/150‑1 (MQ=255) ccAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGccc > 2:31575/1‑150 (MQ=255) aGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCt < 1:211929/100‑1 (MQ=255) aGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCt > 2:211929/1‑100 (MQ=255) aGGCCGAGTACACCACTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCAtgctg > 1:253859/1‑150 (MQ=255) accacTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCATGCTGCGAGCGGgtgt < 2:151389/150‑1 (MQ=255) | ATCGAAATTGCCCTTGCCCAACTGGTCGGCCGCCTTGGCCAAGGCTTCGATCGGCTGGCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCATGCTGCGAGCGGGTGT > NC_002947/139859‑140140 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |