New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	139996 =	12 (0.720)	3 (0.190)	3/276	1.8	21.0%	coding (508/1782 nt)	kinB	alginate biosynthesis sensor protein KinB
	?	NC_002947	140016 =	11 (0.680)					coding (488/1782 nt)	kinB	alginate biosynthesis sensor protein KinB

CAACTGGTCGGCCGCCTTGGCCAAGGCTTCGATCGGCTGGCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCATGCTGCGAGCGGGTGTGGC  >  NC_002947/139877‑140143                                                                                                                                            |                                                                                                                                gctcgcagcatgggtgtcgatcagcctcttggggccgcgttcaatcaggtgcgcaccgacctcatcgattcccacaagcaggcattggacctgattacccgtagcgaggaacgcaccacTGACCAGCAATGCGCGGTCACGGGTGCGTTc                                                                                                                       >  1:33661‑M1/120‑150 (MQ=255)          atgggtgtcgatcagcctcttggggccgcgttcaatcaggtgcgcaccgacctcatcgattcccacaagcaggcattggacctgattacccgtagcgaggaacgcacccgTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTc                                                                                                                    <  2:373759‑M1/34‑1 (MQ=255)          atgggtgtcgatcagcctcttggggccgcgttcaatcaggtgcgcaccgacctcatcgattcccacaagcaggcattggacctgattacccgtagcgaggaacgcacccgTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTc                                                                                                                    >  1:373759‑M1/111‑144 (MQ=255)                 ttGGCCAAGGCTTCGATCGGCTGGCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATc                                                                                                       >  2:178033/1‑150 (MQ=255)                              cGATCGGCTGGCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCt                                                                                          <  1:181665/150‑1 (MQ=255)                               gATCGGCTGGCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTg                                                                                         >  2:343838/1‑150 (MQ=255)                                        gCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGa                                                                                >  2:194815/1‑150 (MQ=255)                                                                          aaGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAAcgcg                                              <  1:194815/150‑1 (MQ=255)                                                                           aGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCgg                                             <  1:371632/150‑1 (MQ=255)                                                                              ccAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGccc                                          >  2:31575/1‑150 (MQ=255)                                                                                aGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCt                                                                                          >  2:211929/1‑100 (MQ=255)                                                                                aGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCt                                                                                          <  1:211929/100‑1 (MQ=255)                                                                                                        aGGCCGAGTACACCACTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCAtgctg                >  1:253859/1‑150 (MQ=255)                                                                                                          gaggaacgcacccgtgaccgcgcattgctggtcaCGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCAt                    >  1:373759‑M2/35‑144 (MQ=255)                                                                                                          gaggaacgcacccgtgaccgcgcattgctggtcaCGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCAt                    <  2:373759‑M2/110‑1 (MQ=255)                                                                                                             gaacgcacccgtgaccgcgcattgctggtcaGTGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCATGCTGCGAGc           >  1:33661‑M2/32‑150 (MQ=255)                                                                                                                   accacTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCATGCTGCGAGCGGgtgt     <  2:151389/150‑1 (MQ=255)                                                                                                                      ggcGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCATGCTGCGAGCGGGTGTGgc  <  2:67069‑M1/147‑1 (MQ=255)                                                                                                                      ggcGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCATGCTGCGAGCGGGTGTGgc  <  2:139672‑M1/147‑1 (MQ=255)                                                                                                                                            |                                                                                                                                CAACTGGTCGGCCGCCTTGGCCAAGGCTTCGATCGGCTGGCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCAGCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCATGCTGCGAGCGGGTGTGGC  >  NC_002947/139877‑140143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.