New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1762884 =14 (0.840)3 (0.190) 3/276 1.8 20.3% coding (476/477 nt) PP_1569 hypothetical protein
?NC_002947 1762915 = 10 (0.620)coding (31/342 nt) PP_1570 head‑tail adaptor

ATCCTGCGATCCAAGCGGCATGCCTGCTCAAGCTGGGCCACTTGTTCGCCAACCGTGAGGAGGTTGTTACCGGGTCGACGGCTGTCGAGCTTCCGCTGGCGTCCCAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCAGGCCGGCAGGCTGCGGCACCGCATCGACATCCAGGAGTTGAGGCCGGTGCGTGACCCGGTGACACTGGAGTTCGGTGAGCCTGAATGGGTCACTCGCTGGGAGAAATGCCCAGCCAGTGTCGAAGACCTGTC  >  NC_002947/1762740‑1763021
                                                                                                                                                |                                                                                                                                         
aTCCTGCGATCCAAGCGGCATGCCTGCTCAAGCTGGGCCACTTGTTCGCCAACCGTGAGGAGGTTGTTACCGGGTCGACGGCTGTCGAGCTTCCGCTGGCGTCCCAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCa                                                                                                                                      <  1:253451/150‑1 (MQ=255)
                        tGCTCAAGCTGGGCCACTTGTTCGCCAACCGTGAGGAGGTTGTTACCGGGTCGACGGCTGTCGAGCTTCCGCTGGCGTCCCAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCAGGCCGGCAGGCTGCGGCACCGCAt                                                                                                              <  2:124526/150‑1 (MQ=255)
                         aagtccctggccgacaggtcttcgacactggctgggcatttctcccagcgagtgacccattcaggctcaccgaactccagtgtcaccgggtcacgcaccggcctcaactcctggatgtcGATGCAGGCCGGCAGGCTGCGGCACCGCATc                                                                                                             >  2:67424‑M1/120‑150 (MQ=255)
                                  gggCCACTTGTTCGCCAACCGTGAGGAGGTTGTTACCGGGTCGACGGCTGTCGAGCTTCCGCTGGCGTCCCAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCAGGCCGGCAGGCTGCGGCACCGCATCGACATCCAg                                                                                                    <  1:153338/150‑1 (MQ=255)
                                       aCTTGTTCGCCAACCGTGAGGAGGTTGTTACCGGGTCGACGGCTGTCGAGCTTCCGCTGGCGTCCCAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCAGGCCGGCAGGCTGCGGCACCGCATCGACATCCAGGAGtt                                                                                               <  1:283286/150‑1 (MQ=255)
                                                           gaggTTGTTACCGGGTCGACGGCTGTCGAGCTTCCGCTGGCGTCCCAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCAGGc                                                                                                                                   >  2:76000/1‑94 (MQ=255)
                                                           gaggTTGTTACCGGGTCGACGGCTGTCGAGCTTCCGCTGGCGTCCCAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCAGGc                                                                                                                                   <  1:76000/94‑1 (MQ=255)
                                                           gaggTTGTTACCGGGTCGACGGCTGTCGAGCTTCCGCTGGCGTCCCAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCAGGCCGGCAGGCTGCGGCACCGCATCGACATCCAGGAGTTGAGGCCGGTGCGTGACCCgg                                                                           >  1:301452/1‑150 (MQ=255)
                                                                     ccGGGTCGACGGCTGTCGAGCTTCCGCTGGCGTCCCAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCAGGCCGGCAGGCTGCGGCACCGCATCGACATCCAGGAGTTGAGGCCGGTGCGTGACCCGGTGTCACTGGa                                                                 <  2:322216/150‑1 (MQ=255)
                                                                     ccGGGTCGACGGCTGTCGAGCTTCCGCTGGCGTCCCAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCAGGCCGGCAGGCTGCGGCACCGCATCGACATCCAGGAGTTGAGGCCGGTGCGTGACCCGGTGACACTGGa                                                                 <  2:128438/150‑1 (MQ=255)
                                                                          tCGACGGCTGTCGAGCTTCCGCTGGCGTCCCAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCAGGCCGGCAGGCTGCGGCACCGCATCGACATCCAGGAGTTGAGGCCGGTGCGTGACCCGGTGACACTGGAGTTCg                                                            <  1:292593/150‑1 (MQ=255)
                                                                               acccattcaggctcaccgaactccagtgtcaccgggtcacgcaccggcctcaactcctggatgtcGATGCAGGCCGGCAGGCTGCGGCACCGCAt                                                                                                              >  2:120914‑M1/66‑95 (MQ=255)
                                                                               acccattcaggctcaccgaactccagtgtcaccgggtcacgcaccggcctcaactcctggatgtcGATGCAGGCCGGCAGGCTGCGGCACCGCAt                                                                                                              <  1:120914‑M1/30‑1 (MQ=255)
                                                                                            ccGCTGGCGTCCCAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCAGGCCGGCAGGCTGCGGCACCGCATCGACATCCAGGAGTTGAGGCCGGTGCGTGACCCGGTGACACTGGAGTTCGGTGAGCCTGAATGGGTCa                                          >  2:49043/1‑150 (MQ=255)
                                                                                                    gTCCCAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCAGGCCGGCAGGCTGCGGCACCGCATCGACATCCAGGAGTTGAGGCCGGTGCGTGACCCGGTGACACTGGAGTTCGGTGAGCCTGAATGGGTCACTCGCTgg                                  <  2:158480/150‑1 (MQ=255)
                                                                                                        cAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCAGGCCGGCAGGCTGCGGCACCGCATCGACATCCAGGAGTTGAGGCCGGTGCGTGACCCGGTGACACTGGAGTTCGGTGAGCCTGAATGGGTCACTCGCTGGgaga                              <  1:66860/150‑1 (MQ=255)
                                                                                                                                    ggATGGGTGTGTGATGCAGGCCGGCAGGCTGCGGCACCGCATCGACATCCAGGAGTTGAGGCCGGTGCGTGACCCGGTGACACTGGAGTTCGGTGAGCCTGAATGGGTCACTCGCTGGGAGAAATGCCCAGCCAGTGTCGAAGACCTGTc  >  2:370638/1‑150 (MQ=255)
                                                                                                                                                |                                                                                                                                         
ATCCTGCGATCCAAGCGGCATGCCTGCTCAAGCTGGGCCACTTGTTCGCCAACCGTGAGGAGGTTGTTACCGGGTCGACGGCTGTCGAGCTTCCGCTGGCGTCCCAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCAGGCCGGCAGGCTGCGGCACCGCATCGACATCCAGGAGTTGAGGCCGGTGCGTGACCCGGTGACACTGGAGTTCGGTGAGCCTGAATGGGTCACTCGCTGGGAGAAATGCCCAGCCAGTGTCGAAGACCTGTC  >  NC_002947/1762740‑1763021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.