New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1762884 =14 (0.840)3 (0.190) 3/276 1.8 20.3% coding (476/477 nt) PP_1569 hypothetical protein
?NC_002947 1762915 = 10 (0.620)coding (31/342 nt) PP_1570 head‑tail adaptor

GGGCCACTTGTTCGCCAACCGTGAGGAGGTTGTTACCGGGTCGACGGCTGTCGAGCTTCCGCTGGCGTCCCAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCAGGCCGGCAGGCTGCGGCACCGCATCGACATCCAGGAGTTGAGGCCGGTGCGTGACCCGGTGACACTGGAGTTCGGTGAGCCTGAATGGGTCACTCGCTGGGAGAAATGCCCAGCCAGTGTCGAAGACCTGTCGGCCAGGGACTT  >  NC_002947/1762774‑1763033
                                                                                                                                             |                                                                                                                      
gggCCACTTGTTCGCCAACCGTGAGGAGGTTGTTACCGGGTCGACGGCTGTCGAGCTTCCGCTGGCGTCCCAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCAGGCCGGCAGGCTGCGGCACCGCATCGACATCCAg                                                                                                                <  1:153338/150‑1 (MQ=255)
     aCTTGTTCGCCAACCGTGAGGAGGTTGTTACCGGGTCGACGGCTGTCGAGCTTCCGCTGGCGTCCCAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCAGGCCGGCAGGCTGCGGCACCGCATCGACATCCAGGAGtt                                                                                                           <  1:283286/150‑1 (MQ=255)
                         gaggTTGTTACCGGGTCGACGGCTGTCGAGCTTCCGCTGGCGTCCCAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCAGGCCGGCAGGCTGCGGCACCGCATCGACATCCAGGAGTTGAGGCCGGTGCGTGACCCgg                                                                                       >  1:301452/1‑150 (MQ=255)
                                   ccGGGTCGACGGCTGTCGAGCTTCCGCTGGCGTCCCAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCAGGCCGGCAGGCTGCGGCACCGCATCGACATCCAGGAGTTGAGGCCGGTGCGTGACCCGGTGTCACTGGa                                                                             <  2:322216/150‑1 (MQ=255)
                                   ccGGGTCGACGGCTGTCGAGCTTCCGCTGGCGTCCCAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCAGGCCGGCAGGCTGCGGCACCGCATCGACATCCAGGAGTTGAGGCCGGTGCGTGACCCGGTGACACTGGa                                                                             <  2:128438/150‑1 (MQ=255)
                                        tCGACGGCTGTCGAGCTTCCGCTGGCGTCCCAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCAGGCCGGCAGGCTGCGGCACCGCATCGACATCCAGGAGTTGAGGCCGGTGCGTGACCCGGTGACACTGGAGTTCg                                                                        <  1:292593/150‑1 (MQ=255)
                                                          ccGCTGGCGTCCCAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCAGGCCGGCAGGCTGCGGCACCGCATCGACATCCAGGAGTTGAGGCCGGTGCGTGACCCGGTGACACTGGAGTTCGGTGAGCCTGAATGGGTCa                                                      >  2:49043/1‑150 (MQ=255)
                                                                  gTCCCAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCAGGCCGGCAGGCTGCGGCACCGCATCGACATCCAGGAGTTGAGGCCGGTGCGTGACCCGGTGACACTGGAGTTCGGTGAGCCTGAATGGGTCACTCGCTgg                                              <  2:158480/150‑1 (MQ=255)
                                                                      cAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCAGGCCGGCAGGCTGCGGCACCGCATCGACATCCAGGAGTTGAGGCCGGTGCGTGACCCGGTGACACTGGAGTTCGGTGAGCCTGAATGGGTCACTCGCTGGgaga                                          <  1:66860/150‑1 (MQ=255)
                                                                                                  ggATGGGTGTGTGATGCAGGCCGGCAGGCTGCGGCACCGCATCGACATCCAGGAGTTGAGGCCGGTGCGTGACCCGGTGACACTGGAGTTCGGTGAGCCTGAATGGGTCACTCGCTGGGAGAAATGCCCAGCCAGTGTCGAAGACCTGTc              >  2:370638/1‑150 (MQ=255)
                                                                                                              gatgcggtgccgcagcctgccggcctgcatcGACATCCAGGAGTTGAGGCCGGTGCGTGACCCGGTGACACTGGAGTTCGGTGAGCCTGAATGGGTCACTCGCTGGGAGAAATGCCCAGCCAGTGTCGAAGACCTGTCGGCCAGGGACtt  >  2:67424‑M2/32‑150 (MQ=255)
                                                                                                               atgcggtgccgcagcctgccggcctgcatcGACATCCAGGAGTTGAGGCCGGTGCGTGACCCGGTGACACTGGAGTTCGGTGAGCCTGAATGGGt                                                        <  1:120914‑M2/65‑1 (MQ=255)
                                                                                                               atgcggtgccgcagcctgccggcctgcatcGACATCCAGGAGTTGAGGCCGGTGCGTGACCCGGTGACACTGGAGTTCGGTGAGCCTGAATGGGt                                                        >  2:120914‑M2/31‑95 (MQ=255)
                                                                                                                                             |                                                                                                                      
GGGCCACTTGTTCGCCAACCGTGAGGAGGTTGTTACCGGGTCGACGGCTGTCGAGCTTCCGCTGGCGTCCCAGCACCTGCTGATGCCTTTCCGCATCCGGATGGGTGTGTGATGCAGGCCGGCAGGCTGCGGCACCGCATCGACATCCAGGAGTTGAGGCCGGTGCGTGACCCGGTGACACTGGAGTTCGGTGAGCCTGAATGGGTCACTCGCTGGGAGAAATGCCCAGCCAGTGTCGAAGACCTGTCGGCCAGGGACTT  >  NC_002947/1762774‑1763033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.