New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1811061 =	14 (0.840)	3 (0.190)	3/270	1.8	22.1%	coding (334/708 nt)	ispD	2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase
	?	NC_002947	1811088 =	8 (0.510)					coding (361/708 nt)	ispD	2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase

ACCCGTACTGGCCTGGCCTGCGCTGCGCCAGCGACCCACGCATCCACTGCGCGGCGGGCGGGCGTGAACGCGCTGACTCGGTGCTTAACGCCTTGCTGGTGCTGCATGCCCAGGGGGCGGCGGACAGCGACTGGGTGCTGGTGCACGATGCTGCGCGGCCGAACCTGGCGCGCAGCGACCTGGACAAGCTGTTGTCGGAGCTGGCGGACGACCCGGTGGGTGGCCTGCTGGCGGTGCCGGCGCGCGACACCCTCAAGCGTGCCGACAGCCATGGCCGGGTGAGTGCTACCGTG  >  NC_002947/1810912‑1811204                                                                                                                                                      |                                                                                                                                                aCCCGTACTGGCCTCGCCTGCGCTGCGCCAGCGACCCACGCATCCACTGCGCGGCGGGCGGGCGTGAACGCGCTGACTCGGTGCTTAACGCCTTGCTGGTGCTGCATGCCCAGGGGGCGGCGGACAGCGACTGGGTGCTGGTGCACGAtg                                                                                                                                                 <  2:215566/150‑1 (MQ=255) aCCCGTACTGGCCTAGCCTGCGCTGCGCCAGCGACCCACGCATCCACTGCGCGGCGGGCGGGCGTGAACGCGCTGACTCGGTGCTTAACGCCTTGCTGGTGCTGCATGCCCAGGGGGCGGCGTACAGCGACTGGGTGCTGGTGCACGAtg                                                                                                                                                 <  2:215561/150‑1 (MQ=255)         tggcctggccTGCGCTGCGCCAGCGACCCACGCATCCACTGCGCGGCGGGCGGGCGTGAACGCGCTGACTCGGTGCTTAACGCCTTGCTGGTGCTGCATGCCCAGGGGGCGGCGGACAGCGACTGGGTGCTGGTGCACGATGCTGCGCgg                                                                                                                                         >  2:275134/1‑150 (MQ=255)              tggcctgCGCTGCGCCAGCGACCCACGCATCCACTGCGCGGCGGGCGGGCGTGAACGCGCTGACTCGGTGCTTAACGCCTTGCTGGTGCTGCATGCCCAGGGGGCGGCGGACAGCGACTGGGTGCTGGTGCACGATGCTGCGCGGCCGaa                                                                                                                                    >  2:167426/1‑150 (MQ=255)                gcctgCGCTGCGCCAGCGACCCACGCATCCACTGCGCGGCGGGCGGGCGTGAACGCGCTGACTCGGTGCTTAACGCCTTGCTGGTGCTGCATGCCCAGGGGGCGGCGGACAGCGACTGGGTGCTGGTGCACGATGCTGCGCGGCCGAAcc                                                                                                                                  >  1:208260/1‑150 (MQ=255)                          tgcggtccacggtagcactcacccggccatggctgtcggcacgcttgagggtgtcgcgcgccggcaccgccagcaggccacccaccgggtcgtccgccagctccgacaacagcttgtccaggtcGCTGCGCGGCCGAACCTGGCGCGCAg                                                                                                                        >  2:230510‑M1/125‑150 (MQ=255)                           gcCAGCGACCCACTCATCCACTGCGCGGCGGGCGGGCGTGAACGCGCTGACTCGGTGCTTAACGCCTTGCTGGTGCTGCATGCCCAGGGGGCGGCGGACAGCGACTGGGTGCTGGTGCACGATGCTGCGCGGCCGAACCTGGCGCGCAGc                                                                                                                       <  2:51810/150‑1 (MQ=255)                                                               cgTGAACGCGCTGACTCGGTGCTTAACGCCTTGCTGGTGCTGCATGCCCAGGGGGCGGCGGACAGCGACTGGGTGCTGGTGCACGATGCTGCGCGGCCGAACCTGGCGCGCAGCGACCTGGACAAGCTGTTGTCGGAGCTGGCGgacgac                                                                                   >  2:319139/1‑150 (MQ=255)                                                                  gAACGCGCTGACTCGGTGCTTAACGCCTTGCTGGTGCTGCATGCCCAGGGGGCGGCGGACAGCGACTGGGTGCTGGTGCACGATGCTGCGCGGCCGAACCTGGCGCGCAGCGACCTGGACAAGCTGTTGTCGGAGCTGGCGGACGACCCg                                                                                <  1:319139/150‑1 (MQ=255)                                                                           gACTCGGTGCTTAACGCCTTGCTGGTGCTGCATGCCCAGGGGGCGGCGGACAGCGACTGGGTGCTGGTGCACGATGCTGCGCGGCCGAACCTGGCGCGCAGCGACCTGGACAAGCTGTTGTCGGAGCTGGCGGACGACCCGGTGGGTGGc                                                                       <  1:98587/150‑1 (MQ=255)                                                                              tCGGTGCTTAACGCCTTGCTGGTGCTGCATGCCCAGGGGGCGGCGGACAGCGACTGGGTGCTGGTGCACGATGCTGCGCGGCCGAACCTGGCGCGCAGCGACCTGGACAAGCTGTTGTCGGAGCTGGCGGACGACCCGGTGGGTGGCctg                                                                    >  1:359093/1‑150 (MQ=255)                                                                                       aaCGCCTTGCTGGTGCTGCATGCCCAGGGGGCGGCGGACAGCGACTGGGTGCTGGTGCACGATGCTGCGCGGCCGAACCTGGCGCGCAGCGACCTGGACAAGCTGTTGTCGGAGCTGGCGGACGACCCGGTGGGTGGCCTGCTGGCGGTg                                                           >  2:55471/1‑150 (MQ=255)                                                                                              gccagcaggccacccaccgggtcgtccgccagctccgacaacagcttgtccaggtcGCTGCGCGGCCGAACCTGGCGCGCAGCGACCt                                                                                                                  >  2:191753‑M1/57‑88 (MQ=255)                                                                                              gccagcaggccacccaccgggtcgtccgccagctccgacaacagcttgtccaggtcGCTGCGCGGCCGAACCTGGCGCGCAGCGACCt                                                                                                                  <  1:191753‑M1/32‑1 (MQ=255)                                                                                                      ctgcATGCCCAGGGGGCGGCGGACAGCGACTGGGTGCTGGTGCACGATGCTGCGCGGCCGAACCTGGCGCGCAGCGACCTGGACAAGCTGTTGTCGGAGCTGGCGGACGACCCGGTGGGTGGCCTGCTGGCGGTGCCGGCGCGCGACAcc                                            <  2:335096/150‑1 (MQ=255)                                                                                                         cATGCCCAGGGGGCGGCGGACAGCGACTGGGTGCTGGTGCACGATGCTGCGCGGCCGAACCTGGCGCGCAGCGACCTGGACAAGCTGTTGTCGGAGCTGGCGGACGACCCGGTGGGTGGCCTGCTGGCGGTGCCGGCGCGCGACACCCTc                                         <  1:167426/150‑1 (MQ=255)                                                                                                                                                cACGATGCTGCGCGGCCGAACCTGGCGCGCAGCGACCTGGACAAGCTGTTGTCGGAGCTGGCGGACGACCCGGTGGGTGGCCTGCTGGCGGTGCCGGCGCGCGACACCCTCAAGCGTGCCGACAGCCATGGCCGGGTGAGTGCTACCGTg  <  1:275134/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                ACCCGTACTGGCCTGGCCTGCGCTGCGCCAGCGACCCACGCATCCACTGCGCGGCGGGCGGGCGTGAACGCGCTGACTCGGTGCTTAACGCCTTGCTGGTGCTGCATGCCCAGGGGGCGGCGGACAGCGACTGGGTGCTGGTGCACGATGCTGCGCGGCCGAACCTGGCGCGCAGCGACCTGGACAAGCTGTTGTCGGAGCTGGCGGACGACCCGGTGGGTGGCCTGCTGGCGGTGCCGGCGCGCGACACCCTCAAGCGTGCCGACAGCCATGGCCGGGTGAGTGCTACCGTG  >  NC_002947/1810912‑1811204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.