| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2685412 | 9 (0.540) | 3 (0.190) | 3/272 | 1.8 | 24.4% | coding (1118/1128 nt) | PP_2352 | hypothetical protein |
| ? | NC_002947 | = 2685422 | 10 (0.630) | coding (1108/1128 nt) | PP_2352 | hypothetical protein | |||||
GGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGCCAGCGGGCCGCCCAGGCTCTCTTCCAGCGGACGTTTACCTATGACAATCACCCGTCGATCCTGGTCATACAGCACATCCACCAGGTTGACGAAACGCT > NC_002947/2685279‑2685556 | gggCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAActgcaccagattgccc < 2:5341‑M1/150‑17 (MQ=255) gTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCg > 2:270441/1‑150 (MQ=255) tCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCAt > 1:107370/1‑150 (MQ=255) agagGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGCCAGCGGGCCGCCCAGGCTCTCTTCCAGCGGACGt > 1:88359/1‑150 (MQ=255) ggCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGCCAGCGGGCCGCCCAGGCTCTCTTCCAGCGGACGTTTa < 1:368288/150‑1 (MQ=255) gtgtAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGCCAGCGGGCCGCCCAGGCTCTCTTCCAGCGGACGTTTACCTATGa < 2:88359/150‑1 (MQ=255) aGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAActgcaccagattgcc < 1:168097‑M1/68‑16 (MQ=255) aGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAActgcaccagattgcc > 2:168097‑M1/1‑53 (MQ=255) cccGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGCCAGCGGGCCGCCCAGGCTCTCTTCCAGCGGACGTTTACCTATGACAATCACCCGTCGATcc < 1:104024/150‑1 (MQ=255) cgcgAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGCCAGCGGGCCGCCCAGGCTCTCTTCCAGCGGACGTTTACCTATGACAATCACCCGTCGATCCTg < 1:110541/150‑1 (MQ=255) gggggCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGCCAGCGGGCCGCCCAGGCTCTCTTCCAGCGGACGTTTACCTAt < 1:205784/96‑1 (MQ=255) gggggCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGCCAGCGGGCCGCCCAGGCTCTCTTCCAGCGGACGTTTACCTAt > 2:205784/1‑96 (MQ=255) gggCAATCTGGTGCAGttgccccctgagcctgcagtgcctgagatggccctttcgcgggtaaacccgctcctacacgacggcctctgccgaaccaccgatgcgcgtgccgcccgcgaaagggccatcgaggtcaaaccatcaacccgccc < 2:5341‑M2/150‑135 (MQ=255) ggCAATCTGGTGCAGttgccccctgagcctgcagtgcctgagatggccctttcgcgggtaaacccgct < 1:168097‑M2/68‑54 (MQ=255) ggCAATCTGGTGCAGttgccccctgagcctgcagtgcctgagatggccctttcgcgggtaaacccgct > 2:168097‑M2/1‑15 (MQ=255) | GGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGCGGCACGCGCATCGGTGGTTCGGCAGAGGCCGTCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCATCTCAGGCACTGCAGGCTCAGGGGGCAATCTGGTGCAGTTGCCCCAACCGGCTGCGGGTACGCATCAGGTCGGCCAGCGGGCCGCCCAGGCTCTCTTCCAGCGGACGTTTACCTATGACAATCACCCGTCGATCCTGGTCATACAGCACATCCACCAGGTTGACGAAACGCT > NC_002947/2685279‑2685556 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |