New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4322733 =	10 (0.600)	4 (0.250)	4/270	1.5	29.1%	intergenic (‑3/‑415)	PP_3791/PP_5629	site‑specific recombinase/protease/amidase
	?	NC_002947	4322760 =	10 (0.640)					intergenic (‑30/‑388)	PP_3791/PP_5629	site‑specific recombinase/protease/amidase

CGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAACGCGGTCACTTAC  >  NC_002947/4322586‑4322843                                                                                                                                                    |                                                                                                               cGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCtt                                                                                                              <  1:177995/150‑1 (MQ=255)      acgcaattgactccagaccgccgggggcatttagtgagctcctcagactttgtcttcagtaagtgaccgcgtttggccgataactgttctccacgaaggacaacaatgggtcggttagcgcctctggattgggttgatcatcCTTGtcct                                                                                                         <  2:359776‑M1/8‑1 (MQ=255)                ctccagaccgccgggggcatttagtgagctcctcagactttgtcttcagtaagtgaccgcgtttggccgataactgttctccacgaaggacaacaatgggtcggttagcgcctctggattgggttgatcatcCTTGTCCTCCATGTGAgg                                                                                               <  1:310815‑M1/18‑1 (MQ=255)                cACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAgg                                                                                               >  2:233807/1‑150 (MQ=255)                        cgccgggggcatttagtgagctcctcagactttgtcttcagtaagtgaccgcgtttggccgataactgttctccacgaaggacaacaatgggtcggttagcgcctctggattgggttgatcatcCTTGTCCTCCATGTGAGGTAGGACaa                                                                                       >  2:310815‑M1/125‑150 (MQ=255)                         gccgggggcatttagtgagctcctcagactttgtcttcagtaagtgaccgcgtttggccgataactgttctccacgaaggacaacaatgggtcggttagcgcctctggattgggttgatcatcc                                                                                                                >  2:10987‑M1/124‑124 (MQ=255)                         gccgggggcatttagtgagctcctcagactttgtcttcagtaagtgaccgcgtttggccgataactgttctccacgaaggacaacaatgggtcggttagcgcctctggattgggttgatcatcc                                                                                                                <  1:10987‑M1/1‑1 (MQ=255)                          ctccGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAgg                                                                                     <  2:187560/150‑1 (MQ=255)                           tccGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGga                                                                                    >  1:263265/1‑150 (MQ=255)                                              cccGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCagag                                                                 >  2:122674/1‑150 (MQ=255)                                                             tatCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCa                                                  <  1:233807/150‑1 (MQ=255)                                                                 tttCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCAttgt                                              >  2:314619/1‑150 (MQ=255)                                                                     tgaccgcgtttggccgataactgttctccacgaaggacaacaatgggtcggttagcgcctctggattgggttgatcatcCTTGTCCTCCATGTGAGGTAGGACAAGgatg                                                                                  >  1:269055‑M1/80‑110 (MQ=255)                                                                     tgaccgcgtttggccgataactgttctccacgaaggacaacaatgggtcggttagcgcctctggattgggttgatcatcCTTGTCCTCCATGTGAGGTAGGACAAGgatg                                                                                  <  2:269055‑M1/31‑1 (MQ=255)                                                                                             aCCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGcc                  >  1:241039/1‑150 (MQ=255)                                                                                                         ttGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAACGCGGTCAc      <  2:228999/150‑1 (MQ=255)                                                                                                             tCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAGCGCGGTCACTTAc  >  1:193019/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                               CGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAACGCGGTCACTTAC  >  NC_002947/4322586‑4322843

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.