| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4322733 = | 10 (0.600) | 4 (0.250) | 4/270 | 1.5 | 29.1% | intergenic (‑3/‑415) | PP_3791/PP_5629 | site‑specific recombinase/protease/amidase |
| ? | NC_002947 | 4322760 = | 10 (0.640) | intergenic (‑30/‑388) | PP_3791/PP_5629 | site‑specific recombinase/protease/amidase | |||||
CTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAACGCGGTCACTTACTGAAGACAAAGTCTGAGGAGCTCACTAAATGCCCCCGGCGGTCTGGAGTCAATTGCGT > NC_002947/4322611‑4322901 | ctccGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAgg < 2:187560/150‑1 (MQ=255) tccGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGga > 1:263265/1‑150 (MQ=255) cccGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCagag > 2:122674/1‑150 (MQ=255) tatCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCa < 1:233807/150‑1 (MQ=255) tttCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCAttgt > 2:314619/1‑150 (MQ=255) tgaccgcgtttggccgataactgttctccacgaaggacaacaatgggtcggttagcgcctctggattgggttgatcatcCTTGTCCTCCATGTGAGGTAGGACAAGgatg > 1:269055‑M1/80‑110 (MQ=255) tgaccgcgtttggccgataactgttctccacgaaggacaacaatgggtcggttagcgcctctggattgggttgatcatcCTTGTCCTCCATGTGAGGTAGGACAAGgatg < 2:269055‑M1/31‑1 (MQ=255) aCCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGcc > 1:241039/1‑150 (MQ=255) ttGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAACGCGGTCAc < 2:228999/150‑1 (MQ=255) tCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAGCGCGGTCACTTAc > 1:193019/1‑150 (MQ=255) catccttgtcctacctcacatggaggacaagGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAACGCGGTCa > 1:269055‑M2/32‑110 (MQ=255) catccttgtcctacctcacatggaggacaagGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAACGCGGTCa < 2:269055‑M2/79‑1 (MQ=255) ttgtcctacctcacatggaggacaagGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAACGCGGTCACTTACTGAAGACAAAGTCTGAGGAGCTCACTAAATGCCCCcggcg > 2:310815‑M2/27‑150 (MQ=255) CTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAACGCGGTCACTTACTGAAGACaaa < 1:69709‑M1/115‑1 (MQ=255) CTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAACGCGGTCACTTACTGAAGACaaa > 2:69709‑M1/1‑115 (MQ=255) CTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAACGCGGTCACTTACTGAAGACAAAGTCTGAGGAGCTCACTAAATGCCCCCGGCGGTCTg < 1:78611‑M1/150‑1 (MQ=255) CTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAACGCGGTCACTTACTGAAGACAAAGTCTGAGGAGCTCACTAAATGCCCCCGGCGGTCTg > 1:314619‑M1/1‑150 (MQ=255) CTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAACGCGGTCACTTACTGAAGACAAAGTCTGAGGAGCTCACTAAATGCCCCCGGCGGTCTg > 2:263265‑M1/1‑150 (MQ=255) cctcacatggaggacaagGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAACGCGGTCACTTACTGAAGACAAAGTCTGAGGAGCTCACTAAATGCCCCCGGCGGTCTGGAg < 1:310815‑M2/132‑1 (MQ=255) cATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAGCGCGGTCACTTACTGAAGACAAAGTCTGAGGAGCTCACTAAATGCCCCCGGCGGTCTGGAg < 2:193019/150‑1 (MQ=255) tgtgAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAACGCGGTCACTTACTGAAGACAAAGTCTGAGGAGCTCACTAAATGCCCCCGGCGGTCTGGAGTc > 2:193820/1‑150 (MQ=255) aggacaagGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAACGCGGTCACTTACTGAAGACAAAGTCTGAGGAGCTCACTAAATGCCCCCGGCGGTCTGGAGTCAATTGCgt < 2:359776‑M2/142‑1 (MQ=255) gGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAACGCGGTCACTTACTGAAGACAAAGTCTGAGGAGCTCACTAAATGCCCCcggc > 2:10987‑M2/2‑124 (MQ=255) gGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAACGCGGTCACTTACTGAAGACAAAGTCTGAGGAGCTCACTAAATGCCCCcggc < 1:10987‑M2/123‑1 (MQ=255) | CTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAACGCGGTCACTTACTGAAGACAAAGTCTGAGGAGCTCACTAAATGCCCCCGGCGGTCTGGAGTCAATTGCGT > NC_002947/4322611‑4322901 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |