| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2973193 | 12 (0.720) | 3 (0.190) | 3/272 | 1.8 | 21.1% | coding (1567/2391 nt) | PP_2599 | chemotaxis sensory transducer family protein |
| ? | NC_002947 | = 2973206 | 11 (0.690) | coding (1580/2391 nt) | PP_2599 | chemotaxis sensory transducer family protein | |||||
TGTACAACCGCATCCACGAAGTACGCATGCGTTTCGAAGTGCTGTGGCGCGATGCGGAGCTGGCTTATTGGCAAGGCCTGGCCAGCGGCGTCGACCAGCAGGTACTGAAAGCCGCACTGCAGCGAAGCCAGGCCGAGCTGCAGGACGACTTCGCTTTCGTCGCCCAGGCCAACATCGGCGGCGAGTTCATGCAGGACACCGATATCCAGCGCTTGCAGGTGATCGGCAAGCGACGCTGGCTGCGCCATTTCGATAACCGCCTGGGCATCTCCCGTGACGAGGC > NC_002947/2973071‑2973353 | tGTACAACCGCATCCACGAAGTACGCATGCGTTTCGAAGTGCTGTGGCGCGATGCGGAGCTGGCTTATTGGCAAGGCCTGGCCAGCGGCGTCGACCAGCAGGTACTGAAAGCCGCACTGCAGCGAAGCCAGGCCGAGCTGCAGGACGACt < 2:140169/150‑1 (MQ=255) aTCCACGAAGTACGCATGCGTTTCGAAGTGCTGTGGCGCGATGCGGAGCTGGCTTATTGGCAAGGCCTGGCCAGCGGCGTCGACCAGCAGGTACTGAAAGCCGCACTGCAGCGAAGCCAGGCCGAGCTGCAGGACGACTTCGCTTtcgtc < 1:78816/150‑1 (MQ=255) gTACGCATGCGTTTCGAAGTGCTGTGGCGCGATGCGGAGCTGGCTTATTGGCAAGGCCTGGCCAGCGGCGTCGACCAGCAGGTACTGAAAGCCGCACTGCAGCGAAGCCAGGCCGAGCTGCAGGACGACTTCGCTTTCGTCGCCCAGGcc > 1:28667/1‑150 (MQ=255) gTTTCGAAGTGCTGTGGCGCGATGCGGAGCTGGCTTATTGGCAAGGCCTGGCCAGCGGCGTCGACCAGCAGGTACTGAAAGCCGCACTGCAGCGAAGCCAGGCCGAGCTGCAGGACGACTTCGCTTTCGTCGCCCAGGCCAACATcggcg > 1:235307/1‑150 (MQ=255) aTGCGGAGCTGGCTTATTGGCAAGGCCTGGCCAGCGGCGTCGACCAGCAGGTACTGAAAGCCGCACTGCAGCGAAGCCAGGCCGAGCTGCAGGACGACTTCGCTTTCGTCGCCCAGGCCAACATCGGCGGCGAGTTCATGCAGGACACCg < 2:101827/150‑1 (MQ=255) gCTGGCTTATTGGCAAGGCCTGGCCAGCGGCGTCGACCAGCAGGTACTGAAAGCCGCACTGCAGCGAAGCCAGGCCGAGCTGCAGGACGACTTCGCTTTCGTCGCCCAGGCCAACATCGGCGGCGAGTTCATGCAGGACACCGATATCCa < 2:380461/150‑1 (MQ=255) gCAAGGCCTGGCCAGCGGCGTCGACCAGCAGGTACTGAAAGCCGCACTGCAGCGAAGCCAGGCCGAGCTGCAGGACGACTTCGCTTTCGTCGCCCAGGCCAACATCGGCGGCGAGTTCATGCAGGACACCGATATCCAGCGCTTGCAGGt > 1:40255/1‑150 (MQ=255) gCCTGGCCAGCGGCGTCGACCAGCAGGTACTGAAAGCCGCACTGCAGCGAAGCCAGGCCGAGCTGCAGGACGACTTCGCTTTCGTCGCCCAGGCCAACATCGGCGGCGAGTTCATGCAGGACACCGATATCCAGCGCTTGCAGGTTATCg > 2:177546/1‑150 (MQ=255) ccGCACTGCAGCGAAGCCAGGCCGAGCTGCAGGACGACTTCGCTTTCGTCGCCCAGGCCAACATCGGCGGCGAGTTCATGCAGGACACCGATATCCAGCGCTTGCAGGTGATCGGCAAGCGACGCTGGCTGCGCCATTTCGATAACCGcc > 2:209441/1‑150 (MQ=255) gCACTGCAGCGAAGCCAGGCCGAgctgcagtgcggctttcagtacctgctggtcgacgccgctg > 1:37754‑M2/1‑23 (MQ=255) gCACTGCAGCGAAGCCAGGCCGAgctgcagtgcggctttcagtacctgctggtcgacgccgctg < 2:37754‑M2/64‑42 (MQ=255) cACTGCAGCGAAGCCAGGCCGAGCTGCAGGACGACTTCGCTTTCGTCGCCCAGGCCAACATCGGCGGCGAGTTCATGCAGGACACCGATATCCAGCGCTTGCAGGTGATCGGCAAGCGACGCTGGCTGCGCCATTTCGATAACCGCCTgg < 2:235307/150‑1 (MQ=255) cTGCAGCGAAGCCAGGCCGAgctgcagtgcggctttcagtacctgctggtcgacgccgctggccaggccttgccaataagccagctccgcatcgcgccacagcacttcgaaacgcatgcgtacttcgtggatgcggttgtacagggtctc < 2:114848‑M2/150‑131 (MQ=255) cGAGCTGCAGGACGACTTCGCTTTCGTCGCCCAGGCCAACATCGGCGGCGAGTTCATGCAGGACACCGATATCCAGCGCTTGCAGGTGATCGGCAAGCGACGCTGGCTGCGCCATTTCGATAACCGCCTGGGCATCTCCCGTGACGAGGc < 2:157639/150‑1 (MQ=255) | TGTACAACCGCATCCACGAAGTACGCATGCGTTTCGAAGTGCTGTGGCGCGATGCGGAGCTGGCTTATTGGCAAGGCCTGGCCAGCGGCGTCGACCAGCAGGTACTGAAAGCCGCACTGCAGCGAAGCCAGGCCGAGCTGCAGGACGACTTCGCTTTCGTCGCCCAGGCCAACATCGGCGGCGAGTTCATGCAGGACACCGATATCCAGCGCTTGCAGGTGATCGGCAAGCGACGCTGGCTGCGCCATTTCGATAACCGCCTGGGCATCTCCCGTGACGAGGC > NC_002947/2973071‑2973353 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |