New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 4132612 =20 (1.200)5 (0.300) 4/284 1.6 24.5% coding (245/687 nt) PP_3634 GNAT family acetyltransferase
?NC_002947 4132646 = 11 (0.660)coding (279/687 nt) PP_3634 GNAT family acetyltransferase

CAGTACGGCGTCGGCATGGAAGTCCACCAGTACCTGCAAGCGCTGGACGGCACCCGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTGCGCTCACGCCATGCCTGCGTGGAGCTGAACGCCTTTGC  >  NC_002947/4132503‑4132771
                                                                                                                                               |                                                                                                                             
cAGTACGGCGTCGGCATGGAAGTCCACCAGTACCTGCAAGCGCTGGACGGCACCCGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATggg                                                                                                                         >  2:371023/1‑150 (MQ=255)
                 ggAAGTCCACCAGTACCTGCAAGCGCTGGACGGCACCCGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGc                                                                                                        >  2:255565/1‑150 (MQ=255)
                      tCCACCAGTACCTGCAAGCGCTGGACGGCACCCGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTc                                                                                                   >  2:141639/1‑150 (MQ=255)
                           gcccagcagggcacgggcgatgccctggcggcgatggctggcgcacacggccagaaaggccaatgcacaggcctgcccatcgTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATggg                                                                                                                         >  2:152281‑M1/83‑123 (MQ=255)
                           gcccagcagggcacgggcgatgccctggcggcgatggctggcgcacacggccagaaaggccaatgcacaggcctgcccatcgTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATggg                                                                                                                         <  1:152281‑M1/41‑1 (MQ=255)
                                 cTGCAAGCGCTGGACGGCACCCGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTgc                                                                                        >  2:197403/1‑150 (MQ=255)
                                              aCGGCACCCGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGAACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATcgcc                                                                           <  2:185168/150‑1 (MQ=255)
                                                  cACCCGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCa                                                                       <  2:303115/150‑1 (MQ=255)
                                                       gcgGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCa                                                                  <  1:198116/150‑1 (MQ=255)
                                                         ggTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATc                                                                <  1:78851/150‑1 (MQ=255)
                                                                                        aTGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTGCGCTCAc                                 <  1:371023/150‑1 (MQ=255)
                                                                                                      cccatcgtcctgggctggcagcgacagcgcaaagcccagcaCGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGc                                              >  2:152281‑M2/42‑123 (MQ=255)
                                                                                                      cccatcgtcctgggctggcagcgacagcgcaaagcccagcaCGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGc                                              <  1:152281‑M2/82‑1 (MQ=255)
                                                                                                                 gggctggcagcgacagcgcaaagcccaggaCGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTGCGCTCACGCCATGCCTGCGTGGAGCTGAACGc        >  1:26484‑M2/31‑150 (MQ=255)
                                                                                                                  ggCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTGCGCTCACGCCATGCCTGCGTGGAGCTGAACGcc       <  1:197403/150‑1 (MQ=255)
                                                                                                                     attGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTGCGCTCACGCCATGCCTGCGTGGAGCTGAACGCCttt    <  2:197903/149‑1 (MQ=255)
                                                                                                                       gcagcgacagcgcaaagcccaggaCGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTGCGCTCACGCCATGCCTGCGTGGAGCTGAACGCCTTTGc  >  2:229785‑M2/25‑150 (MQ=255)
                                                                                                                       gcagcgacagcgcaaagcccaggaCGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTGCGCTCACGCCATGCCTGCGTGGAGCTGAACGCCTTTGc  >  2:229800‑M2/25‑150 (MQ=255)
                                                                                                                                               |                                                                                                                             
CAGTACGGCGTCGGCATGGAAGTCCACCAGTACCTGCAAGCGCTGGACGGCACCCGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTGCGCTCACGCCATGCCTGCGTGGAGCTGAACGCCTTTGC  >  NC_002947/4132503‑4132771

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.