New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1617825 =	20 (0.520)	12 (0.350)	9/234	1.1	43.9%	intergenic (‑38/+135)	PP_1417/PP_1418	tricarboxylate transport protein TctB/tricarboxylate transport protein TctC
	?	NC_002947	1617914 =	13 (0.380)					intergenic (‑127/+46)	PP_1417/PP_1418	tricarboxylate transport protein TctB/tricarboxylate transport protein TctC

TCACGGCCAGGGCGGCACACATCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCG  >  NC_002947/1617700‑1617883                                                                                                                              |                                                           cgtagagcgggacggctatgtgaagaagaatgtggctgactacaaggcgctggccatggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtggcggGATCGGGcgcg                                                  >  2:160125‑M1/126‑136 (MQ=255)  gaagagctggacggctatgtgaagaagcaagtggctgactacaaggcgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCGGGCGCGa                                                 >  1:60805‑M1/125‑136 (MQ=255)  caagagctggacggctatgtgaagaagcaagtggctgactacaaggcgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgcgtcgcGATCGGGCGCGa                                                 >  1:797811‑M1/125‑136 (MQ=255)  cACGGCCAGGGCGGCACACATCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGa                                                 <  2:979183/136‑1 (MQ=255)   aCGGCCAGGGCGGCACACATCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGaa                                                <  1:862997/136‑1 (MQ=255)   aCGGCCAGGGCGGCACACATCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGaa                                                <  2:558751/136‑1 (MQ=255)     ggCCAGGGCGGCACACATCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGc                                              >  2:981453/1‑136 (MQ=255)       gctggacggctatgtgaagaagcaagtggctgactacaaggcgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCGGGCGCGAAGCTg                                            >  1:382887‑M1/120‑136 (MQ=255)       gctggacggctatgtgaagaagcaagtggctgactacaaggcgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCGGGCGCGAAGCTg                                            >  2:927255‑M1/120‑136 (MQ=255)            gcggcACACATCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCt                                       <  1:981453/136‑1 (MQ=255)                   tgtgaagaagcaagtggctgactacaaggcgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCGGGCGCGAAGCt                                             >  2:737577‑M1/108‑123 (MQ=255)                   tgtgaagaagcaagtggctgactacaaggcgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCGGGCGCGAAGCt                                             <  1:737577‑M1/16‑1 (MQ=255)                      tCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCg                             <  2:574711/136‑1 (MQ=255)                         gaagcaagtggctgactacaaggcgctggccaaggccttcggcctgatccagtaagcctggcggactcaccaccactcctgtgggagcggccttgcgtcgcGAGCGGGCGCGAAGCTGCCGCTAAACCTGCCGATg                          >  2:910060‑M1/102‑136 (MQ=255)                         caagcaagtggcgtactacaaggcgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgcgtcgcGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATg                          >  2:907081‑M1/102‑136 (MQ=255)                                  ccAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTa                 >  2:601683/1‑136 (MQ=255)                                  ccAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTa                 >  1:144113/1‑136 (MQ=255)                                      ggCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGaa             <  1:560182/136‑1 (MQ=255)                                       gCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAg            <  2:922390/136‑1 (MQ=255)                                           aaaTGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATc        <  2:6004/136‑1 (MQ=255)                                               gCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTAt    <  2:351777/136‑1 (MQ=255)                                                 gctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCg  >  1:102602‑M1/78‑136 (MQ=255)                                                 gctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCg  >  1:745825‑M1/78‑136 (MQ=255)                                                 gTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCg  <  1:601683/136‑1 (MQ=255)                                                 gTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCg  <  2:244428/136‑1 (MQ=255)                                                                  gcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATc        >  1:780191‑M1/61‑113 (MQ=255)                                                                  gcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATc        <  2:780191‑M1/53‑1 (MQ=255)                                                                                                            ggagcggccttgtgtcggGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATc   <  2:181999‑M1/58‑1 (MQ=255)                                                                                                            ggagcggccttgtgtcggGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATc   >  1:181999‑M1/19‑76 (MQ=255)                                                                                                            ggAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTg                                            <  2:516355/35‑1 (MQ=255)                                                                                                            ggAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTg                                            >  1:516355/1‑35 (MQ=255)                                                                                                            ggAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATc   >  1:22257/1‑76 (MQ=255)                                                                                                            ggAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATc   <  2:22257/76‑1 (MQ=255)                                                                                                            ggAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAA‑‑‑‑CCGATGCGATCTGTACGAAGCATCGTATCg  <  2:388515/73‑1 (MQ=37)                                                                                                            ggAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAA‑‑‑‑CCGATGCGATCTGTACGAAGCATCGTATCg  >  1:388515/1‑73 (MQ=37)                                                                                                                              |                                                           TCACGGCCAGGGCGGCACACATCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCG  >  NC_002947/1617700‑1617883

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.