mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 315,243 | G→T | W19L (TGG→TTG) | cysQ → | 3'(2'),5'‑bisphosphate nucleotidase CysQ |
| RA | 1,484,303 | T→G | V125G (GTC→GGC) | yhdX → | amino acid ABC transporter permease |
| JC | 1,843,229 | (GCGCCAGTTCGTGGC)1→2 | coding (1607/2754 nt) | gacS ← | sensor protein GacS |
| RA | 3,823,901 | +T | coding (1248/1293 nt) | kguT ← | 2‑ketogluconate transporter, putative |
| RA | 3,824,415 | A→G | I245T (ATC→ACC) | kguT ← | 2‑ketogluconate transporter, putative |
| RA | 3,824,717 | C→T | M144I (ATG→ATA) | kguT ← | 2‑ketogluconate transporter, putative |
| MC JC | 3,827,335 | Δ51 bp | coding (626‑676/1020 nt) | ptxS ← | 2‑ketogluconate utilization repressor |
| RA | 4,743,195 | +C | intergenic (+464/+288) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,197 | A→G | intergenic (+466/+286) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,199 | C→T | intergenic (+468/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,202 | C→T | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,205 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,207 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,221 | C→T | intergenic (+490/+262) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,223 | A→C | intergenic (+492/+260) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,743,226 | 2 bp→GC | intergenic (+495/+256) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 6183852 | 6183858 | 7 | 337 [0] | [0] NA | atpI/– | ATP synthase protein I/– |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1 = | 0 (0.000) | 337 (0.960) | 159/296 | 0.4 | 100% | intergenic (–/+146) | –/parB | –/chromosome‑partitioning protein |
| ? | NC_002947 | = 6183851 | 0 (0.000) | intergenic (‑3/–) | atpI/– | ATP synthase protein I/– | |||||
| * | ? | NC_002947 | 2179666 = | 263 (0.750) | 387 (1.120) | 174/294 | 0.1 | 74.5% | intergenic (+102/‑64) | PP_5485/PP_1931 | GNAT family acetyltransferase/hypothetical protein |
| ? | NC_002947 | = 4459541 | 4 (0.010) | coding (213/696 nt) | pcaI | 3‑oxoadipate CoA‑transferase subunit A | |||||
| * | ? | NC_002947 | = 2181342 | 310 (0.890) | 340 (0.980) | 156/294 | 0.5 | 68.4% | intergenic (+176/+92) | PP_1931/PP_5486 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | 4459540 = | 6 (0.020) | coding (212/696 nt) | pcaI | 3‑oxoadipate CoA‑transferase subunit A | |||||