New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 2753991	4 (0.120)	25 (0.740)	23/280	0.5	59.5%	intergenic (+45/+17)	bamE/ratB	lipoprotein component of BamABCDE OM biogenesis complex/UPF0125 family protein
	?	NC_000913_3_bme_pgi	= 4503516	30 (0.890)					intergenic (‑84/‑543)	insG/yjhB	IS4 transposase/putative MFS transporter, membrane protein

GCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_bme_pgi/2753880‑2753991 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAATGCCGATCAGTTAAGGATCAGTTGACCGATCCAGTGGCTGTGTAAGAATCCGGAAACGCTCACTTGTTTCCGGATTTTTTTATGCACATTGGACAGGCTCTTGATCTGGTATCCCGTTACGATTCTCTGCGTAACCCAC  <  NC_000913_3_bme_pgi/4503516‑4503375                                                                                                                                                                                                                                                                GCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCTAATGC                                                                                                                                          >  2:93625/1‑118 GCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCTAATGC                                                                                                                                          <  1:93625/118‑1     ACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCTAATGCCGATCAGTTAAGGATCAGTTGACCGATCCAGTGGC                                                                                                       >  1:234026/1‑149      CCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCTAATGCCGATCAGTTAAGGATCAGTTGACCGATCCAGTGGCT                                                                                                      <  1:351026/149‑1       CTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCTAATGCCGATCAGTTAAGGATCAGTTGACCGATCCAGTGGCTG                                                                                                     >  2:327770/1‑149       CTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGGTAAAAAAGGTGCTCAATGAGCTAATGCCGATCAGTTAAGGATCAGTTGACCGATCCCGTGGCTG                                                                                                     >  2:364641/1‑149       CTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAATTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCTACTGCCGATCAGTTAAAGATCAGTTGACCGATCCAGTGGCTG                                                                                                     >  2:48604/1‑149        TTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGGGTGGTAACTACTAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCTATTGCCGATAAGTTAAGGATCCGGTGACCGATCAAGTGGCTGg                                                                                                    >  2:560397/1‑148             CAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCTAATGCCGATCAGTTAAGGATCAGTTGACCGATCCAGTGGCTGTGTAAG                                                                                               >  1:16119/1‑149                     GTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCTAATGCCGAT                                                                                                                                      <  1:417390/102‑1                     GTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCTAATGCCGAT                                                                                                                                      >  2:417390/1‑102                             ACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCACAATGAGCTAATGCCGATCAGTTAAGGATCAGTTGACCGATCCAGTGGCTGTGTAAGAATCCGGAAACGCTCA                                                                               >  2:216576/1‑149                                 ATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCTAATGCCGATCAGTTAAGGATCAGTTGACCGATCCAGTGGCTGTGTAAGAATCCGGAAACGCTCACTTG                                                                           >  2:365725/1‑149                                       ATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCTAATGCCGATCAGTTAAGGATCAGTTGACCGATCCAGTGGCTGTGTAAGAATCCGGAAACGCTCACTTGTTTCCG                                                                     >  2:438836/1‑149                                              ACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCTAATGCCGATCAGTTAAGGATCAGTTGACCGATACAGTGGCTGTGTAAGAATACGGCAAGGCTCACATTTTTCCGGAGTTat                                                              >  2:20432/1‑147                                               CCTGCGATGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCTAATGCCGATCAGTTAAGGATCAGTTGACCGATCCAGTGGCTGTGTAAGAATCCGGAAAAGCTAACTTGGGTCCGTAGTTTTT                                                             <  2:520038/149‑1                                                CTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCTAATGCCGATCAGTTAAGGATCAGTTGACCGATCCAGTGGCTGTGTAAGAATCCGGAAACGCTCACTTGTTTCCGGATTTTTTT                                                            <  1:365725/149‑1                                                   CGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCTAATGCCGATCAGTTAAGGATCAGTTGACCGATCCAGTGGCTGTGTAAGAATCCGGAAACGCTCACTTGTTTCCGGATTTTTTTATG                                                         <  2:234026/149‑1                                                                          AGTTGCTTTCAAAGACGTTAAAAAAGGTGCTCAATGAGCTAATGCTGATCAGTTAAGGATCAGTTGGCCGATCCAGTGGCTGTGTAAGAATCCGGAAACGCTCACTTGTTTCCGGATTTTTTTATGCACATTGGACAGGCTCTTGATCT                                  <  1:559727/149‑1                                                                           GTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCTAATGCCGATCAGTTAAGGATCAGTTGACCGATCCAGTGGCTGTGTAAGAATCCGGAAACGCTCACTTGTTTCCGGATTTTTTTATGCACATTGGACAGGCTCTTGATCTG                                 <  2:560508/149‑1                                                                                TCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCTAATGCCGATCACTTAAGGATCAGTTAACCGATCCAGTGGCTGTGTAAGAATCCGGAAACGCTCACTTGTTTCCGGATTTTTTTATGCACATTGGACAGGCTCTTGATCTGGTATC                            >  1:18073/1‑149                                                                                    AAAGACGTTAAAAAAGGTGCTCAATGAGCGAATGCCGATCAGTTAAGGATCAGTTGACCGATCCAGTGTCTGTGTAAGAATCCGGAAACGCTCACTTGTTTACGGATTTTTTTATGCACATTGGAGAGGCTCACGATCTGGTACTCCGT                        >  1:506003/1‑149                                                                                           TTAAAAAAGGTGCTCAATGAGCTAATGCCGATCAGTTAAGGATCAGTTGACCGATCCAGTGGCTGTGGAAGAATCCGGAAACGCTCACTTGTTTCCGGATTTTTTTATGCACATTGGACAGGCTCTTGATCTGGTATCCCGTTACGATT                 >  1:414162/1‑149                                                                                                        TCAATGAGCTAATGCCGATCAGTTAAGGATCAGTTGACCGATCCAGTGGCTGTGTAAGAATCCGGAAACGCTCACTTGTTTCCGGATTTTTTTATGCACATTGGGGAGGGTGTAGGTCTGGTATCCCGTTACGATTCCCTGCGTAACCC    >  1:110896/1‑149                                                                                                          AATGAGCTAATGCCGATCAGTTAAGGATCAGTTGACCGATCCAGTGGCTGTGTAAGAATCCGGAAACCCTCACTTGTTTCCGGATTTTTTTATGCACGTTGGACAGGCTCTTGATCTGGTATCCGGTTACGCTTGTCTGCCTCACCCAC  >  2:537800/1‑149                                                                                                                                                                                                                                                                GCTGACCTTTAACAGTAGCGGTGTGTTGACCAATATTGATAACAAACCTGCGCTGAGTGGTAACTAATAATAAAGTTGCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_bme_pgi/2753880‑2753991 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAATGCCGATCAGTTAAGGATCAGTTGACCGATCCAGTGGCTGTGTAAGAATCCGGAAACGCTCACTTGTTTCCGGATTTTTTTATGCACATTGGACAGGCTCTTGATCTGGTATCCCGTTACGATTCTCTGCGTAACCCAC  <  NC_000913_3_bme_pgi/4503516‑4503375

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.