| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 258676 | NA (NA) | 13 (0.580) +CGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACC |
7/148 | 1.9 | NA | pseudogene (1/331 nt) | crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913_3_bme_pgi | 837584 = | NA (NA) | noncoding (46/123 nt) | REP77 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP77 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
ATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_bme_pgi/258604‑258676‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCAT > NC_000913_3_bme_pgi/837584‑837622 ||||||||||||||||||||||||||||||||||||||||||||||||| ATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCt > 2:403469/1‑149 GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGCCTGATAAGACGCGGTCGCGTCttat < 1:49877/150‑5 AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGCCTGATAAGACGCGGTCGCGTCttatca > 2:415459/1‑144 AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGCCTGATAAGACGCGGTCGCGTCttatca < 1:415459/150‑7 CAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGG < 1:403469/150‑1 AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTATCAT‑GCTGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGC < 1:348857/150‑1 AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGC < 3:103897/150‑1 AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCttatcag < 3:86535/146‑8 AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAG > 4:86535/1‑146 ACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCct < 2:10441/116‑3 ACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCct > 1:10441/1‑114 AAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGC < 3:73216/111‑1 AAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGC > 4:73216/1‑111 CGTGCTATGTATTAATTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGCCTGATAAGA > 1:361475/1‑64 CGTGCTATGTATTAATTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGCCTGATAAGA > 1:361459/1‑64 CGTGCTATGTATTAATTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGCCTGATAAGA < 2:361475/64‑1 CGTGCTATGTATTAATTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGCCTGATAAGA < 2:361459/64‑1 CTATGTATTAATTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCtta < 2:278154/75‑4 CTATGTATTAATTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGCCTGATGCGACGCGGTCGCGTCtta > 1:278154/1‑72 ATGTATTAATTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGCCTGATAAG > 1:434625/1‑57 ATGTATTAATTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGCCTGATAAG < 2:434625/57‑1 TATTAATTGCCGAATACGATGTA‑CATATCGGCATCGACCT < 2:369487/40‑1 TATTAATTGCCGAATACGATGTA‑CATATCGGCATCGACCT > 1:369487/1‑40 ATTAATTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGCC < 2:216495/46‑1 ATTAATTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGCC > 1:216495/1‑46 TTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGCCTGATAAGAC < 2:183907/50‑1 TTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGCCTGATAAGAC > 1:183907/1‑50 TTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGC < 2:341909/40‑1 TTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGC > 1:341909/1‑40 TTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAG < 3:153765/38‑1 TTGCCGAATACGATGTA‑CATATCGGCATCGACCTGTAG > 4:153765/1‑38 CCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGCCT > 3:232490/1‑39 CCGAATACGATGTA‑CATATCGGCATCGACCTGTAGGCCT < 4:232490/39‑1 ||||||||||||||||||||||||||||||||||||||||||||||||| ATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_bme_pgi/258604‑258676‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCAT > NC_000913_3_bme_pgi/837584‑837622 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |