| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 258676 | NA (NA) | 13 (0.580) +CGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACC |
7/148 | 1.9 | NA | pseudogene (1/331 nt) | crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913_3_bme_pgi | 837584 = | NA (NA) | noncoding (46/123 nt) | REP77 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP77 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
GCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGCTTAATTTATTGTTGTTGGTGGCGGAAGTGATGCTGTATCC > NC_000913_3_bme_pgi/837443‑837730 | gCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCt < 3:277209/150‑1 (MQ=255) ctggACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCgg < 1:264816/148‑1 (MQ=255) cGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCg < 2:360727/150‑1 (MQ=255) atagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacctcgtgctatgtattaattgccgaatacgatgtacatatcggcatcgaccTGTAGGCCTGATGCGACGCGGTCGCGtct > 2:403469‑M2/122‑149 (MQ=255) cAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGc < 1:427065/150‑1 (MQ=255) gaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacctcgtgctatgtattaattgccgaatacgatgtacatatcggcatcgaccTGTAGGCCTGATAAGACGCGGTCgcgtcttat < 1:49877‑M2/32‑5 (MQ=255) cAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCa < 3:193834/150‑1 (MQ=255) aacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacctcgtgctatgtattaattgccgaatacgatgtacatatcggcatcgaccTGTAGGCCTGATAAGACGCGGtcgcgtcttatca < 1:415459‑M2/34‑7 (MQ=255) aacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacctcgtgctatgtattaattgccgaatacgatgtacatatcggcatcgaccTGTAGGCCTGATAAGACGCGGtcgcgtcttatca > 2:415459‑M2/117‑144 (MQ=255) cagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacctcgtgctatgtattaattgccgaatacgatgtacatatcggcatcgaccTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAgg < 1:403469‑M2/36‑1 (MQ=255) agaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacctcgtgctatgtattaattgccgaatacgatgtatcatgctgcatcgaccTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGc < 1:348857‑M2/37‑1 (MQ=255) agaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacctcgtgctatgtattaattgccgaatacgatgtacatatcggcatcgaccTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGc < 3:103897‑M2/37‑1 (MQ=255) aagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacctcgtgctatgtattaattgccgaatacgatgtacatatcggcatcgaccTGTAGGCCTGATGCGACGCGgtcgcgtcttatcag < 3:86535‑M2/35‑8 (MQ=255) aagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacctcgtgctatgtattaattgccgaatacgatgtacatatcggcatcgaccTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAg > 4:86535‑M2/112‑146 (MQ=255) tAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTg > 1:181154/1‑150 (MQ=255) gATCAATGCGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGGTAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCg > 2:180735/1‑150 (MQ=255) gATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCg > 1:344179/1‑150 (MQ=255) ggTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATg > 3:130161/1‑144 (MQ=255) ggTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATg < 4:130161/144‑1 (MQ=255) agCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGc > 3:223170/1‑150 (MQ=255) gTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGt > 4:282825/1‑150 (MQ=255) actaaatcagtaagttggcagcatcacctcgtgctatgtattaattgccgaatacgatgtacatatcggcatcgaccTGTATGCCTGATGCGACGCGGTCGCGTCTTATCAggcct > 1:10441‑M2/78‑114 (MQ=255) actaaatcagtaagttggcagcatcacctcgtgctatgtattaattgccgaatacgatgtacatatcggcatcgaccTGTATGCCTGATGCGACGCGGTCGCGTCTTATCAggcct < 2:10441‑M2/39‑3 (MQ=255) cTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTcc < 2:181154/150‑1 (MQ=255) aaatcagtaagttggcagcatcacctcgtgctatgtattaattgccgaatacgatgtacatatcggcatcgaccTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGc < 3:73216‑M2/37‑1 (MQ=255) aaatcagtaagttggcagcatcacctcgtgctatgtattaattgccgaatacgatgtacatatcggcatcgaccTGTAGGCCTGATGCGACGCGGTCGCGTCTTATCAGGc > 4:73216‑M2/75‑111 (MQ=255) aaCAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTa > 2:104293/1‑150 (MQ=255) cagacagGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACt < 2:344179/150‑1 (MQ=255) cagacagGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGCTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACt > 2:248918/1‑150 (MQ=255) acagGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGaa < 3:74228/142‑1 (MQ=255) acagGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGaa > 4:74228/1‑142 (MQ=255) cagGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTtata < 1:198853/150‑1 (MQ=255) ggAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATgcgg > 1:373275/1‑112 (MQ=255) ggAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATgcgg < 2:373275/112‑1 (MQ=255) ggAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAAt > 3:189865/1‑150 (MQ=255) tACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCg < 1:222981/150‑1 (MQ=255) ttGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAg > 1:336890/1‑150 (MQ=255) cgtgctatgtattaattgccgaatacgatgtacatatcggcatcgaccTGTAGGCCTGATAAGa > 1:361459‑M2/49‑64 (MQ=255) cgtgctatgtattaattgccgaatacgatgtacatatcggcatcgaccTGTAGGCCTGATAAGa > 1:361475‑M2/49‑64 (MQ=255) cgtgctatgtattaattgccgaatacgatgtacatatcggcatcgaccTGTAGGCCTGATAAGa < 2:361475‑M2/16‑1 (MQ=255) cgtgctatgtattaattgccgaatacgatgtacatatcggcatcgaccTGTAGGCCTGATAAGa < 2:361459‑M2/16‑1 (MQ=255) ctatgtattaattgccgaatacgatgtacatatcggcatcgaccTGTAGGCCTGATGCGACGCGGTCGcgtctta > 1:278154‑M2/45‑72 (MQ=255) ctatgtattaattgccgaatacgatgtacatatcggcatcgaccTGTAGGCCTGATGCGACGCGGTCGcgtctta < 2:278154‑M2/31‑4 (MQ=255) ggACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGCt > 4:47032/1‑150 (MQ=255) atgtattaattgccgaatacgatgtacatatcggcatcgaccTGTAGGCCTGATAAg < 2:434625‑M2/15‑1 (MQ=255) atgtattaattgccgaatacgatgtacatatcggcatcgaccTGTAGGCCTGATAAg > 1:434625‑M2/43‑57 (MQ=255) tattaattgccgaatacgatgtacatatcggcatcgacct < 2:369487‑M2/1‑1 (MQ=255) tattaattgccgaatacgatgtacatatcggcatcgacct > 1:369487‑M2/40‑40 (MQ=255) cGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGCTTaa < 4:223170/150‑1 (MQ=255) attaattgccgaatacgatgtacatatcggcatcgaccTGTAGGcc < 2:216495‑M2/8‑1 (MQ=255) attaattgccgaatacgatgtacatatcggcatcgaccTGTAGGcc > 1:216495‑M2/39‑46 (MQ=255) cGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGGTAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTACTACGAATTACTTATAAATTACCGCAGTACCGCTTAATTTAt < 1:180735/150‑1 (MQ=255) cGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGCTTAATTTAt < 2:132240/150‑1 (MQ=255) ttgccgaatacgatgtacatatcggcatcgaccTGTAg > 4:153765‑M2/34‑38 (MQ=255) ttgccgaatacgatgtacatatcggcatcgaccTGTAg < 3:153765‑M2/5‑1 (MQ=255) ttgccgaatacgatgtacatatcggcatcgaccTGTAGGc > 1:341909‑M2/34‑40 (MQ=255) ttgccgaatacgatgtacatatcggcatcgaccTGTAGGc < 2:341909‑M2/7‑1 (MQ=255) ttgccgaatacgatgtacatatcggcatcgaccTGTAGGCCTGATAAGAc > 1:183907‑M2/34‑50 (MQ=255) ttgccgaatacgatgtacatatcggcatcgaccTGTAGGCCTGATAAGAc < 2:183907‑M2/17‑1 (MQ=255) ccgaatacgatgtacatatcggcatcgaccTGTAGGCCt > 3:232490‑M2/31‑39 (MQ=255) ccgaatacgatgtacatatcggcatcgaccTGTAGGCCt < 4:232490‑M2/9‑1 (MQ=255) aCGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAg < 3:218000/64‑1 (MQ=255) aCGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAg > 4:218000/1‑64 (MQ=255) cGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGCTTAATTTAttgttgt < 2:336890/150‑1 (MQ=255) gCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGCTTAATTTAttgttgtt > 2:381314/1‑150 (MQ=255) cTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGCTTAATTTATTGTTGTtgg > 3:92089/1‑150 (MQ=255) gATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCt > 1:443107/1‑64 (MQ=255) gATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCt < 2:443107/64‑1 (MQ=255) gTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGCTTAATTTATTGTTGTTGGTGGCGGa > 3:92542/1‑150 (MQ=255) ccAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCg < 4:110509/114‑1 (MQ=255) ccAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCg < 4:110457/114‑1 (MQ=255) ccAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCg > 3:110509/1‑114 (MQ=255) ccAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCg > 3:110457/1‑114 (MQ=255) ccAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGCTTAATTTATTGTTGTTGGTGGCGGAAg < 4:189865/150‑1 (MQ=255) aCGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTAc > 4:110695/1‑117 (MQ=255) aCGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTAc < 3:110695/117‑1 (MQ=255) ttCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGCTTAATTTATTGTTGTTGGTGGCGGAAGTGATGCt < 4:152764/150‑1 (MQ=255) tCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGc > 1:73797/1‑54 (MQ=255) tCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGc < 2:73797/54‑1 (MQ=255) gATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAAc > 4:37178/1‑67 (MQ=255) gATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAAc < 3:37178/67‑1 (MQ=255) ttttGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGCTTAATTTATTGTTGTTGGTGGCGGAAGTGATGCTGTATcc < 1:104293/150‑1 (MQ=255) | GCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATCCGTCCAACGGTTCGGATTTTGTAGGCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGCTTAATTTATTGTTGTTGGTGGCGGAAGTGATGCTGTATCC > NC_000913_3_bme_pgi/837443‑837730 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |