mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_pgi | 4,296,088 | 0 | C | T | 30.6% | 80.2 / 51.2 | 74 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_hsa_pgi | 3,269,969 | 0 | A | C | 27.8% | 41.6 / 10.5 | 40 | intergenic (+367/+247) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| * | NC_000913_3_hsa_pgi | 526,800 | 0 | A | G | 21.8% | 159.8 / 42.9 | 88 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_hsa_pgi | 526,796 | 0 | C | G | 21.7% | 191.1 / 40.0 | 94 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_hsa_pgi | 805,312 | 0 | G | T | 21.3% | 125.5 / 23.7 | 75 | E604* (GAG→TAG) | ybhJ | aconitase family protein |
| * | NC_000913_3_hsa_pgi | 526,792 | 0 | A | C | 20.6% | 167.5 / 31.6 | 98 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_hsa_pgi | 3,561,972 | 0 | A | T | 20.0% | 191.8 / 37.0 | 100 | intergenic (‑149/‑41) | glpE/glpD | thiosulfate:cyanide sulfurtransferase (rhodanese)/sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| Marginal new junction evidence (lowest skew 10 of 230 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_pgi | 4240769 = | 1426 (15.260) | 82 (0.940) | 25/276 | 3.1 | 5.8% | intergenic (+6/+38) | psiE/xylE | phosphate starvation inducible protein/D‑xylose transporter |
| ? | NC_000913_3_hsa_pgi | 4240797 = | 1354 (15.540) | intergenic (+34/+10) | psiE/xylE | phosphate starvation inducible protein/D‑xylose transporter | |||||
| * | ? | NC_000913_3_hsa_pgi | = 4235784 | 2071 (22.160) | 62 (0.720) | 24/274 | 3.2 | 3.1% | intergenic (‑2551/‑150) | lysC/yjbE | lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein |
| ? | NC_000913_3_hsa_pgi | = 4235786 | 1905 (22.030) | intergenic (‑2553/‑148) | lysC/yjbE | lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein | |||||
| * | ? | NC_000913_3_hsa_pgi | 4233518 = | 1201 (12.850) | 48 (0.580) | 20/264 | 3.8 | 4.4% | intergenic (‑285/‑2416) | lysC/yjbE | lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein |
| ? | NC_000913_3_hsa_pgi | 4233534 = | 1027 (12.330) | intergenic (‑301/‑2400) | lysC/yjbE | lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein | |||||
| * | ? | NC_000913_3_hsa_pgi | = 4222777 | 1356 (14.510) | 67 (0.750) | 22/282 | 3.8 | 5.0% | intergenic (‑290/+27) | arpA/iclR | ankyrin repeat protein/transcriptional repressor |
| ? | NC_000913_3_hsa_pgi | = 4222785 | 1267 (14.230) | intergenic (‑298/+19) | arpA/iclR | ankyrin repeat protein/transcriptional repressor | |||||
| * | ? | NC_000913_3_hsa_pgi | 4216263 = | 1560 (16.690) | 60 (0.670) | 22/284 | 3.8 | 4.0% | coding (786/1602 nt) | aceB | malate synthase A |
| ? | NC_000913_3_hsa_pgi | 4216278 = | 1376 (15.350) | coding (801/1602 nt) | aceB | malate synthase A | |||||
| * | ? | NC_000913_3_hsa_pgi | 4215254 = | 1858 (19.880) | 91 (1.020) | 22/282 | 3.8 | 4.8% | intergenic (+45/‑224) | metA/aceB | homoserine O‑transsuccinylase/malate synthase A |
| ? | NC_000913_3_hsa_pgi | 4215272 = | 1880 (21.120) | intergenic (+63/‑206) | metA/aceB | homoserine O‑transsuccinylase/malate synthase A | |||||
| * | ? | NC_000913_3_hsa_pgi | 4250535 = | 1472 (15.750) | 74 (0.830) | 21/284 | 4.0 | 4.9% | intergenic (+33/‑196) | malM/yjbI | maltose regulon periplasmic protein/pseudogene, SopA‑related, pentapeptide repeats‑containing |
| ? | NC_000913_3_hsa_pgi | 4250555 = | 1438 (16.040) | intergenic (+53/‑176) | malM/yjbI | maltose regulon periplasmic protein/pseudogene, SopA‑related, pentapeptide repeats‑containing | |||||
| * | ? | NC_000913_3_hsa_pgi | = 4214492 | 1671 (17.880) | 55 (0.620) | 20/280 | 4.1 | 3.3% | coding (213/930 nt) | metA | homoserine O‑transsuccinylase |
| ? | NC_000913_3_hsa_pgi | = 4214509 | 1618 (18.310) | coding (230/930 nt) | metA | homoserine O‑transsuccinylase | |||||
| * | ? | NC_000913_3_hsa_pgi | = 4243378 | 1401 (14.990) | 48 (0.540) | 20/282 | 4.2 | 3.4% | coding (167/891 nt) | malG | maltose transporter subunit |
| ? | NC_000913_3_hsa_pgi | = 4243392 | 1364 (15.320) | coding (153/891 nt) | malG | maltose transporter subunit | |||||
| * | ? | NC_000913_3_hsa_pgi | = 4246699 | 1362 (14.570) | 60 (0.660) | 19/286 | 4.5 | 4.3% | intergenic (‑252/‑113) | malE/malK | maltose transporter subunit/maltose ABC transportor ATPase |
| ? | NC_000913_3_hsa_pgi | = 4246723 | 1351 (14.960) | intergenic (‑276/‑89) | malE/malK | maltose transporter subunit/maltose ABC transportor ATPase | |||||