New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_KO_pgi	3654539 =	33 (0.910)	4 (0.120)	4/258	4.5	11.1%	intergenic (+12/‑144)	slp/dctR	outer membrane lipoprotein/Putative LuxR family repressor for dicarboxylate transport
	?	NC_000913_3_KO_pgi	3654568 =	34 (1.020)					intergenic (+41/‑115)	slp/dctR	outer membrane lipoprotein/Putative LuxR family repressor for dicarboxylate transport
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAATTATAAGAAACATAACCGACTCCTGGTGCGGACATTAACTTTATAATCAGTTTGCCAAAGGTAATTAACAGGACAGGGCTTATAATAATAATAGTTAGCTTACTGTGTATTAATTTGATGTAATGCATGATGCAGATGCTGAGAAAGCATCTGCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_KO_pgi/3654698‑3654539 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcatctgcatcATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGATTATAAAGTTAATGTCCGCACCAGGAGTCGGTTATGTTTCTTATAATTACCAGGGATACGATGTT  >  NC_000913_3_KO_pgi/3654568‑3654714                                                                                                                                                                                                                                                                                                                     TAATTATAAGAAACATAACCGACTCCTGGTGCGGACATTAACTTTATAATCAGTTTGCCAAAGGTAATTAACAGGACAGGGCTTATAATAATAATAGTTAGCTTACTGTGTATTAATTTGATGTAATGCATGATGCAGATGCTGAGAAA                                                                                                                                                                <  2:352935/149‑1     TATAAGAAACATAACCGACTCCTGGTGCGGACATTAACTTTATAATCAGTTTGCCAAAGGTAATTAACAGGACAGGGCTTATAATAATAATAGTTAGCTTACTGTGTATTAATTTGATGTAATGCATGATGCAGATGCTGAGAAAGCAT                                                                                                                                                            <  1:215396/149‑1       gAAGAAACATAACCGACTCCTGGTGCGGACATTAACATTATACACAGTTTGCCAAAGGTAATTAACAGGACAGGGCTTATAATAATAATAGTTAGCTTACTGTGTATTAATTTGATGTAATGCATGATGCAGATGCTGAGAAAGCATCT                                                                                                                                                          <  1:283807/148‑1           AAACATAACCGACTCCTGGGGCGGACATTAACTTTATAATCAGTTTGCCAAAGGTAATTAACAGGACAGGGCTTATAATAATAATAGTTAGCTTACTGTGTATTAATTTGATGTAATGCATGATGCAGATGCTGAGAAAGCATCTGCAT                                                                                                                                                      <  2:488316/149‑1                                                                GTAATTAACAGGACAGGGCTTATAATAATAATAGTTAGCTTACTGTGTATTAATTTGATGTAATGCATGATGCAGATGCTGAGAAAGCAT                                                                                                                                                            <  1:121172/90‑1                                                                GTAATTAACAGGACAGGGCTTATAATAATAATAGTTAGCTTACTGTGTATTAATTTGATGTAATGCATGATGCAGATGCTGAGAAAGCAT                                                                                                                                                            >  2:121172/1‑90                                                                   ATTAACAGGACAGGGCTTATAATAATAATAGTTAGCTTACTGTGTATTAATTTGATGTAATGCATGATGCAGATGCTGAGAAAGCATC                                                                                                                                                           <  1:28678/88‑1                                                                   ATTAACAGGACAGGGCTTATAATAATAATAGTTAGCTTACTGTGTATTAATTTGATGTAATGCATGATGCAGATGCTGAGAAAGCATC                                                                                                                                                           >  2:28678/1‑88                                                                                                                          TGTAATGCATGATGCAGATGCTGAGAAAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAA                                                                       >  1:367015/1‑117                                                                                                                          TGTAATGCATGATGCAGATGCTGAGAAAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAA                                                                       <  2:367015/117‑1                                                                                                                                     ATGCAGATGCTGAGAAAGCATCTGCATCTTGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGATTATAAAGTTAATGTCCGCACCAGGAGTCGG                                    <  1:57805/141‑1                                                                                                                                     ATGCAGATGCTGAGAAAGCATCTGCATCTTGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGATTATAAAGTTAATGTCCGCACCAGGAGTCGG                                    >  2:57805/1‑141                                                                                                                                                             CATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGATTATAACGTTACTGTCCGCACCAGGAGTCGGTTATGTTTCTTATAATTACCAGGGATACGATG    >  2:482699/1‑149                                                                                                                                                             CATCATGCAGTACATCAAATTAATACACAGTAAGCTAACTAGTATTATTATAAGCCCTGTCCTGTTAATTACCGTTGGCAAACTGATTATAAAGATAATGTCCGCACCAGGAGTGGGTTATGTTTCTTATAATTACCAGGGATACGATa    >  2:409208/1‑148                                                                                                                                                               TCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGATTATAAAGTTAATGTCCGCACCAGGAGTCGGTTATGTTTCTTATAATTACCAGGGATACGATGTT  <  2:178733/149‑1                                                                                                                                                                                                                                                                                                                     TAATTATAAGAAACATAACCGACTCCTGGTGCGGACATTAACTTTATAATCAGTTTGCCAAAGGTAATTAACAGGACAGGGCTTATAATAATAATAGTTAGCTTACTGTGTATTAATTTGATGTAATGCATGATGCAGATGCTGAGAAAGCATCTGCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_KO_pgi/3654698‑3654539 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcatctgcatcATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGATTATAAAGTTAATGTCCGCACCAGGAGTCGGTTATGTTTCTTATAATTACCAGGGATACGATGTT  >  NC_000913_3_KO_pgi/3654568‑3654714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.