| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_KO_pgi | 3654539 = | 33 (0.910) | 4 (0.120) | 4/258 | 4.5 | 11.1% | intergenic (+12/‑144) | slp/dctR | outer membrane lipoprotein/Putative LuxR family repressor for dicarboxylate transport |
| ? | NC_000913_3_KO_pgi | 3654568 = | 34 (1.020) | intergenic (+41/‑115) | slp/dctR | outer membrane lipoprotein/Putative LuxR family repressor for dicarboxylate transport | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATTTGAGAGAAGTGGTTAATACCACCTATAACCTGTGGGATTACGGCTATGGTGCATTCTGGCCGGAACCGGGCTGGGGTGCGCCTTACTACACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGATTATAAAGTTAATGTCCGCACCAGGAGTCGGTTAT > NC_000913_3_KO_pgi/3654394‑3654684 | aTTTGAGAGAAGTGGTTAATACCACCTATAACCTGTGGGATTACGGCTATGGTGCATTCTGGCCGGAACCGGGCTGGGGTGCGCCTTACTACCCCCATGCGGTGCGTCAGGTTACACCTGAGCTTGTCAAATAACACCACCGAAagatg < 2:381264/149‑1 (MQ=255)aTTTGAGAGAAGTGGTTAATACCACCTATAACCTGTGGGATTACGGCTATGGTGCATTCTGGCCGGAACCGGGCTGGGGTGCGCCTTACTACACCAATGCGGTGAGTCAGGTCACACCTGAGCTGGTCAAATAACACCACCGAAagatg > 1:178733/1‑149 (MQ=255) ttGAGAGAAGTGGTTAATACCACCTATCATTGATTTTGTTACGGCTATGGTGCATTCTGGCCGGAACCGGGCTGGGGTGCGCCTTACTACACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAagagatc > 1:631191/1‑145 (MQ=255) gagaAGTGGTTAATACCACCTATAACCTGTGGGATTACGGCTATGGTGCATTCTGGCCGGAACCGGGCTGGGGTGCGCCTTACTACACCAATGCGGTGAGTCCGGTAACACCTGAGCTGGTCAAATAACAACACAGCAcgactcagatg > 2:281335/1‑149 (MQ=255) aaGTGGTTAATACCACCTATAACCTGTGGGATTACGGCTATGGTGCATTCTGGCTGGAACCGGGCTGGGGTGCGCCTTACTACACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCtt > 1:351426/1‑149 (MQ=255) cctACCACCTATAACCTGTGGGACTTCGTCTGTCGTGCATTCTGGCCAGAACGCGGCTGGGGTGCGCCTTAGTCCACCAATGGGGTGAACCGGGTAACACCGGGCGTGGTCAAATTAAACCCCCGTACGATACGAATGCTTTCTCaacc > 2:48197/3‑146 (MQ=255) caccTATAACCTGTGGGATTACGGCTATGGTGCATTCTGGCCGGAACCGGGCTGGGGTGCGACTTACTACACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGGCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGc > 1:472644/1‑149 (MQ=255) gtgtgGGATTACGGCTATGATGCATTCTGGCAGGAACCGGGCGGGGGTGCGCCTTACTACACCAAAGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCGACGCAAGATGCAGATACTTTCTCAGGAACTGCATCATGCAtt > 2:338379/2‑149 (MQ=255) tgtgGGATTACGGCTATGGTGCATTCTGGCCGGAACCGGGCTGGGGTGCGCCTTACTACACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTa > 1:135857/1‑149 (MQ=255) cTATGGTGCATTCTGGCCGGAACCGGGCTGGGGTGCGCCTTACTACACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATa < 1:132927/149‑1 (MQ=255) tGCATTCTGGCCGGAACCGGGATGGGGTGCGCCTTACTACACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGt > 2:461858/1‑149 (MQ=255) aaCCGGGCTGGGGGGCGCCTTACTACACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACtattat < 1:225504/149‑1 (MQ=255) gggCTGGGGTGCGCCTTACTACACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACtattattatt < 1:449793/149‑1 (MQ=255) ggTGCGCCTTACTACACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGc < 1:360017/88‑1 (MQ=255) ggTGCGCCTTACTACACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGc > 2:360017/1‑88 (MQ=255) tacACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATacac > 1:401823/1‑109 (MQ=255) tacACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATacac < 2:401823/109‑1 (MQ=255) acacCAATACGGTGAGTCACGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCGGCATCATGCATTATAGCAAATTAAGACACAGTAAGCTAACTAATTGTCTTATGAGCCCTGTCCTGTTAAt > 2:540206/1‑149 (MQ=255) aaTGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATtata < 2:152143/127‑1 (MQ=255) aaTGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATtata > 1:152143/1‑127 (MQ=255) ggTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTAACTTTGGc > 1:248828/1‑149 (MQ=255) tGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGAGGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATATGCCCTGTCCTGTTAATTACCTTTGGCaa > 1:290265/1‑149 (MQ=255) ggTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGAtt > 2:269114/1‑149 (MQ=255) ggTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGAtt > 2:492034/1‑149 (MQ=255) ggTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGAtt < 1:492034/149‑1 (MQ=255) cacCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCGTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGATTATaaa < 2:294560/149‑1 (MQ=255) acCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGATGATAAAg > 1:481724/1‑149 (MQ=255) aGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGATTATAAAGTTAAt < 2:472644/149‑1 (MQ=255) accccaccGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCTTGTCCTGTTAATTACCTTTGGCAAACTGATTATAATGTTAATGTCCGCACCAGGa < 2:216400/146‑1 (MQ=255) gAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGAt < 2:549283/116‑1 (MQ=255) gAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTGAATTACCTTTGGCAAACTGAt > 1:549283/1‑116 (MQ=255) aaaaCATTCAGATGCCTTCTCAGGATCTGCATCATGCATTACATCGAATTAATACACAGTAATCTAACTATTATTATTCTAAGCCCGATCCTGTTAATTACCTTTGGCAATCTGATTATGAAGTTAATGTCCGCACCAGGAGTCGGTTa < 1:540206/148‑1 (MQ=255) aaaGATGCAGATGCTTTCTCAGCATCTGCAGCATGCATTACATCAAATTAATACCCAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGATTATAAAGTTAATGTCCGCACCAGGAGTCGGTTAt < 1:523012/149‑1 (MQ=255) | ATTTGAGAGAAGTGGTTAATACCACCTATAACCTGTGGGATTACGGCTATGGTGCATTCTGGCCGGAACCGGGCTGGGGTGCGCCTTACTACACCAATGCGGTGAGTCAGGTAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAACTATTATTATTATAAGCCCTGTCCTGTTAATTACCTTTGGCAAACTGATTATAAAGTTAATGTCCGCACCAGGAGTCGGTTAT > NC_000913_3_KO_pgi/3654394‑3654684 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |