mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_pgi | 526,796 | 0 | C | G | 28.0% | 103.1 / 50.6 | 76 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 4,295,320 | 0 | C | T | 26.8% | 69.6 / 31.4 | 57 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_pae_pgi | 526,792 | 0 | A | C | 24.7% | 85.4 / 38.6 | 76 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 526,800 | 0 | A | G | 24.6% | 111.2 / 30.8 | 71 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| Marginal new junction evidence (lowest skew 10 of 71 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 2062353 | 50 (1.080) | 8 (0.190) | 6/262 | 5.1 | 15.3% | intergenic (+18/+38) | asnV/ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| ? | NC_000913_3_pae_pgi | = 2062357 | 43 (1.020) | intergenic (+22/+34) | asnV/ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein | |||||
| * | ? | NC_000913_3_pae_pgi | = 3046069 | 29 (0.630) | 7 (0.160) | 6/276 | 5.4 | 16.7% | intergenic (‑168/+99) | ygfF/gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| ? | NC_000913_3_pae_pgi | 4070457 = | 42 (0.940) | intergenic (‑56/+58) | yihR/yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase | |||||
| * | ? | NC_000913_3_pae_pgi | = 3046069 | 29 (0.630) | 6 (0.130) | 6/276 | 5.4 | 14.8% | intergenic (‑168/+99) | ygfF/gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| ? | NC_000913_3_pae_pgi | = 3504887 | 41 (0.920) | intergenic (+104/+48) | frlR/yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein | |||||
| * | ? | NC_000913_3_pae_pgi | = 3046069 | 29 (0.630) | 6 (0.130) | 6/276 | 5.4 | 16.4% | intergenic (‑168/+99) | ygfF/gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| ? | NC_000913_3_pae_pgi | = 3046082 | 33 (0.740) | intergenic (‑181/+86) | ygfF/gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex | |||||
| * | ? | NC_000913_3_pae_pgi | 624579 = | 49 (1.060) | 6 (0.130) | 6/276 | 5.4 | 13.9% | intergenic (‑69/‑306) | fepB/entC | ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1 |
| ? | NC_000913_3_pae_pgi | = 3046064 | 27 (0.610) | intergenic (‑163/+104) | ygfF/gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex | |||||
| * | ? | NC_000913_3_pae_pgi | = 2059931 | 56 (1.210) | 8 (0.170) +A |
6/284 | 5.5 | 13.3% | intergenic (+5/+33) | asnU/cbl | tRNA‑Asn/ssuEADCB/tauABCD operon transcriptional activator |
| ? | NC_000913_3_pae_pgi | = 2062369 | 49 (1.060) | intergenic (+34/+22) | asnV/ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein | |||||
| * | ? | NC_000913_3_pae_pgi | 2058023 = | 31 (0.670) | 8 (0.180) +CA |
6/282 | 5.5 | 16.9% | intergenic (+449/+4) | yeeN/asnW | UPF0082 family protein/tRNA‑Asn |
| ? | NC_000913_3_pae_pgi | = 2062369 | 49 (1.060) | intergenic (+34/+22) | asnV/ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein | |||||
| * | ? | NC_000913_3_pae_pgi | = 2917925 | 58 (1.260) | 3 (0.090) +35 bp |
3/216 | 5.7 | 6.4% | noncoding (38/95 nt) | RIP202 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP202 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_pae_pgi | = 3706060 | NA (NA) | noncoding (98/98 nt) | RIP266 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP266 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_pae_pgi | = 1097463 | 13 (0.280) | 6 (0.140) | 5/270 | 5.7 | 35.0% | intergenic (+634/+102) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_pae_pgi | = 1097467 | 10 (0.230) | intergenic (+638/+98) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_pae_pgi | = 1097294 | 15 (0.330) | 6 (0.140) | 5/270 | 5.7 | 30.6% | intergenic (+465/+271) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_pae_pgi | = 1097455 | 13 (0.300) | intergenic (+626/+110) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||