New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi 4249656 =807 (15.230)3 (0.060) 3/258 NT 0.40% coding (843/921 nt) malM maltose regulon periplasmic protein
?NC_000913_3_pae_pgi 4249717 = 722 (14.270)coding (904/921 nt) malM maltose regulon periplasmic protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 935 total aligned reads displayed.

CGGTAGGTAACACGGCGGCACCAGCTGTGGCTGCACCCGCTCCGGCACCGGTGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTC  >  NC_000913_3_pae_pgi/4249508‑4249804
                                                                                                                                                    |                                                                                                                                                    
cGGTAGGTAATAAGGCGTATCTCGCTGTGGCTGCACCCGCTGGGGCACCGGTGAAGAAGTGCGAGCCGATGCTCAAGGAGATGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTaaaa                                                                                                                                                      <  1:208892/149‑1 (MQ=255)
 ggtaggtaACACGGCGGCACCAGCTGTGGCTGCACCCGCTCCGGCACCGGTGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAAc                                                                                                                                                     >  2:754919/1‑149 (MQ=255)
  aatggatattcttagtgaagaagaagtgagttactataaaaaatcgctcatatcccaggaaggaagcataaaaaaaggtgcgccaggagacgcaccagttgttgcaaaatcagcactgtggggcgtaattaccccttgccttttacACt                                                                                                                                                    >  2:565599‑M1/147‑149 (MQ=255)
  aatagatattcttagtgaagaagaagtgagttactataaaaaatcgctcatatcccaggaaggaagcataaaaaaaggtgcgccaggagacgcaacagttgttgcaaaatcagcactgtggggcgtaattaccccttgccttttacACt                                                                                                                                                    >  2:68208‑M1/147‑149 (MQ=255)
   taggtaACACGGCGGCACCAGCTGTGGCTGCACCCGCTCCGGCACCGGTGAAGAAAAGCGAGCCGAGGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGCTGAGCTTGATAAGGCGTTAAAACTg                                                                                                                                                   >  2:387327/1‑149 (MQ=255)
   cggggaaCACGGCGGGGCGAGCGGTGGCTGAGCCCTGTGCGGGTCAGGTGAAGAAAAGCGGGCCGATGCTCAACGACACGGAAAGTTAGTTTAATACCGCTATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTg                                                                                                                                                   <  2:333477/144‑1 (MQ=255)
     ggatatgcttaatgaagaagaactgagttactataaaaaatcgctaatatcccaggaaggaagcatagaaaaaggtgcgccaggagacgtaccaggggttgcaaacacagctctttgcggcgtaattaccccttgccttttacACTGCt                                                                                                                                                 >  2:867477‑M1/144‑149 (MQ=255)
     ggaaattagtagtgaagaagaagtgagttactataaaaaatcgctcatatcccaggaaggaagcataaaaaaaggtgcgccaggagacgcaccagttgttgcaaaatcagcactgtggggcgtaattaccccttgccttttacACTGCt                                                                                                                                                 >  1:364536‑M1/144‑149 (MQ=255)
            cggcggCACCAGCTGTGGCTGCACCCGCTCCGGCACCGGTGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGaa                                                                                                                                          <  2:374527/149‑1 (MQ=255)
            cggcggCACCAGCGGTGGCTGCACCCGCTCCGGCACCGGTGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGaa                                                                                                                                          <  2:837548/149‑1 (MQ=255)
                 gcACCAGCTGTGGCTGCACCCGCTCCGGCACCGGTGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGa                                                                                                                                     <  2:494285/149‑1 (MQ=255)
                 gcACCAGCTGTGGCTGCACCCGCTCCGGCACCGGTGAAGAAAAGCGAGCCGATGCTCAACGACACGCTAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGCAGCTGa                                                                                                                                     >  1:908963/1‑149 (MQ=255)
                  cACCAGCTGTGGCTGCACCCGCTCCGGCACCGGTGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGaa                                                                                                                                    <  1:464905/149‑1 (MQ=255)
                   aCCAGCTGTGGCTGCACCCTCTCCGGCACCGGTGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAAc                                                                                                                                   <  1:632147/149‑1 (MQ=255)
                     cAGCTGTGGCTGCACCCGCTCCGGCACCGGTGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGc                                                                                                                                 >  2:134025/1‑149 (MQ=255)
                       gccgtgGCTGCACCCGGTACGGCACCGGTGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTCCCGATACTGCCGCCTTAAAACTGCTTGATGAAGCTGAACGCCt                                                                                                                               <  1:240802/146‑1 (MQ=255)
                       gCTGTGGCTGTACCCGCGCCGGATCCAGTGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCCATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCt                                                                                                                               <  1:589289/149‑1 (MQ=255)
                       gCTGTGGCTGCACCCGCTCCGGCACCGGTGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGc                                                                                                                                 >  2:665700/1‑147 (MQ=255)
                       gCTGGGGCTGCACGCGCTGCTGCACCGGGGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGccg                                                                                                                               <  2:626039/149‑2 (MQ=255)
                          gtgGCTGCACCCGCTCCGGACCCGGTGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACACTGTCGCGAAAGGTGATGTTGATAAGGCGTTACAACTCCTTCATGAAGCAGAACGCCTggg                                                                                                                            >  2:981044/1‑149 (MQ=255)
                            ggCTGCACCCGCTCCGGCACCGGTGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGAt                                                                                                                          <  2:81633/149‑1 (MQ=255)
                             gcgcaaCCTGCTACGGCACGGTGGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATc                                                                                                                         <  2:956336/144‑1 (MQ=255)
                                gagcccGCTCCTGCACCGGGGAAGAAAAGCGAGTCGATGCTTAACGATACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTTATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGAc                                                                                                                      <  2:470579/146‑1 (MQ=255)
                                  aCCCGCTCCGGCACCGGTGAAGAAAAGCGAGCCGATGTTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACAt                                                                                                                    <  1:152079/149‑1 (MQ=255)
                                   cccGCTCCGGCACCGGTGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGATGAACGCATGGGATCGCCATc                                                                                                                   >  1:890336/1‑149 (MQ=255)
                                   cccGCTCCGGCACCGGTGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAAGCGTTAAAACTGCTTGATGAAGCAAAACGCCTGGGATCGACATc                                                                                                                   >  1:406690/1‑149 (MQ=255)
                                    ccGCTCCGGCACCGGTGAAGAAAAGCGAGCCGATGCTCAACGACCCGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCt                                                                                                                  >  2:215307/1‑149 (MQ=255)
                                    ccGCTCCGGCACCGGTGAAGAAAAGCGAGCCGATGCTCAACGACACGGAACAGGAGTGTAGTACCGCGCTCAACAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTACCTCATGACGCTGTACGCTTGGGATCGACATCt                                                                                                                  >  1:196067/1‑149 (MQ=255)
                                    ccGCTCCGGCACCGGTGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAACCATTATTTCTGAAGCTGAACGCCTGGGATCGACATCt                                                                                                                  <  1:745981/149‑1 (MQ=255)
                                    ccGCTCCGGCACCGGTGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCt                                                                                                                  >  1:666123/1‑149 (MQ=255)
                                      gCTCCGGCACCGGTGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAAc                                                                                                                                                     <  2:457329/112‑1 (MQ=255)
                                      gCTCCGGCACCGGTGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGc                                                                                                                >  2:618573/1‑149 (MQ=255)
                                        tCCGGCACCGGTGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGccc                                                                                                              >  1:838996/1‑149 (MQ=255)
                                            gCACCGTTGAAGAAAAGCGAGTCCATGCTTAACAACACGTAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTc                                                                                                          <  1:377286/149‑1 (MQ=255)
                                            gCACCGGTGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTc                                                                                                          <  1:580917/149‑1 (MQ=255)
                                             cACCGGTGAAGAAAAGCGATCCGATGCTCAACGACACGGTAAGTTATTTTAAGACCGCGATCAATAACGCTGTCGAGAAAGGTGATGTTGGTAAGGCGTTAAAACTGCGTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTcc                                                                                                         <  2:252054/149‑1 (MQ=255)
                                                cgttGAAGAAAAGCGAGCCGATGCTCAACGAACTGGAAAGTTATTTTAATAACGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGTGTTAAAACTGCTTTATGAAGCTGAACGTCAAGAGGCTACAGCTGCCCGTTCCAcc                                                                                                      <  2:319151/146‑1 (MQ=255)
                                                 ggTGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCAcat                                                                                                     >  1:518051/1‑147 (MQ=255)
                                                  gTGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCtt                                                                                                    >  2:642355/1‑149 (MQ=255)
                                                    taagaaAAGCGACCACATTCTCAAAGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGAGGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTa                                                                                                  <  1:98520/148‑1 (MQ=255)
                                                     aagaaAAGCGGTGCGATGCTTAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTAt                                                                                                 <  2:857720/149‑1 (MQ=255)
                                                       gaaAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATGCCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTAtta                                                                                               >  1:490633/1‑147 (MQ=255)
                                                       gaaAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATca                                                                                               <  1:295781/149‑1 (MQ=255)
                                                        aaaaGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATcag                                                                                              <  2:234678/149‑1 (MQ=255)
                                                        aaaaGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGATTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATcag                                                                                              >  2:347754/1‑149 (MQ=255)
                                                          aaGCGTGCCGATGCTCAACGACACTGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATcagca                                                                                            <  2:41642/149‑1 (MQ=255)
                                                            gCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGTGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAgt                                                                                          <  1:335259/149‑1 (MQ=255)
                                                            gCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTGTCAGCAgt                                                                                          >  1:168795/1‑149 (MQ=255)
                                                            gCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAgt                                                                                          >  1:534315/1‑149 (MQ=255)
                                                                 ccGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTaaa                                                                                     >  2:935723/1‑149 (MQ=255)
                                                                  cGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTaaaa                                                                                    <  1:765942/149‑1 (MQ=255)
                                                                  cGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTaaaa                                                                                    <  1:284845/149‑1 (MQ=255)
                                                                    aTGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACt                                                                                                                                                    <  1:933318/83‑1 (MQ=255)
                                                                    aTGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAgg                                                                                  >  1:790227/1‑149 (MQ=255)
                                                                      gCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCt                                                                                                                  >  2:177180/1‑115 (MQ=255)
                                                                         cAACGACACGGAAAGTTATGTTAATACCGCTATCAAAAGCGCTTTCGCTAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAgg                                                                             <  1:960396/149‑1 (MQ=255)
                                                                         aaaaaggtgcgccaggagacgcaccagttgttgcaaaatcagcactgtggggcgtaattaccccttgccttttacACTg                                                                                                                                                   <  2:1005369‑M1/4‑1 (MQ=255)
                                                                          aaCGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTTAAAGGCAAggg                                                                            <  1:615395/149‑1 (MQ=255)
                                                                          aaCGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAggg                                                                            <  1:850578/149‑1 (MQ=255)
                                                                          aaCGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAggg                                                                            >  1:721860/1‑149 (MQ=255)
                                                                          aaCGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTAAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAggg                                                                            <  1:948261/149‑1 (MQ=255)
                                                                           aCGAGAGGGAAAGTGGTTGTAAGACCGCGATCAAAAAGGCTGTTGCGAAGGGGGATGTTGATAAGGCGTTAAAACCGCTTGAGGAAGCTGAACGCCTGGGATCGACATCGGGCCGTTCCAGCTTTATCAGCAGTGTAAAAGGCAAgggg                                                                           <  2:272602/149‑1 (MQ=255)
                                                                           aCGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGCCAAgggg                                                                           >  2:530121/1‑149 (MQ=255)
                                                                            cGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCTTGGGCTCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGt                                                                          <  2:921034/149‑1 (MQ=255)
                                                                             gACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTa                                                                         >  1:453524/1‑149 (MQ=255)
                                                                             gACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTa                                                                         >  1:1000148/1‑149 (MQ=255)
                                                                                 cGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACa                                                                                                                     <  2:515818/101‑1 (MQ=255)
                                                                                 cGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTa                                                                     <  1:495443/149‑1 (MQ=255)
                                                                                 cGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTa                                                                     >  2:806524/1‑149 (MQ=255)
                                                                                  ggAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGa                                                                                                                       <  2:598644/98‑1 (MQ=255)
                                                                                  ggAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGa                                                                                                                       >  1:598644/1‑98 (MQ=255)
                                                                                    aaaGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGc                                                                  <  2:545268/149‑1 (MQ=255)
                                                                                      aGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGccc                                                                <  1:12941/149‑1 (MQ=255)
                                                                                       gTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGTCCGGACCACCTTTATCAGCAGTTCAAAAGGCAAGGGGTAATTAAGcccc                                                               >  1:228666/1‑149 (MQ=255)
                                                                                        ttAGTTTAATACCGCGATCAAAAACGCTGTCGCGAAAAGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCACCAGTGTAAAAGGCAAGGGGTAATTACGCCCca                                                              <  2:787865/149‑1 (MQ=255)
                                                                                          aTTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCcaca                                                            <  1:560609/149‑1 (MQ=255)
                                                                                          aTTTTAATACCGAGATCAAAAACACTGTGCCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCcaca                                                            <  2:402525/149‑1 (MQ=255)
                                                                                           ttttAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTAc                                                                    <  1:178318/140‑1 (MQ=255)
                                                                                                  aCCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGAt                                                    >  1:269350/1‑149 (MQ=255)
                                                                                                    cgctATCAAAAACGCTGTCGTTAAAGGTGACGTTGACAAGCCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGACCGACCTCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGAttt                                                  <  2:580581/149‑1 (MQ=255)
                                                                                                    cgcgATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGAttt                                                  >  1:624073/1‑149 (MQ=255)
                                                                                                       gATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGc                                               >  1:314557/1‑149 (MQ=255)
                                                                                                         tCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTTTCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGcaa                                             <  1:655124/149‑1 (MQ=255)
                                                                                                         tCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGcaa                                             <  1:80284/149‑1 (MQ=255)
                                                                                                            aaaaCGCCGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGcaacaa                                          <  1:113583/149‑1 (MQ=255)
                                                                                                            aaaaCGATGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACATTGCTGATTTTGcaacaa                                          <  2:767771/149‑1 (MQ=255)
                                                                                                                   cgTCGCGAAATGTGTTGTTGAAAAGGCGTTAAAACGGCTTGAGGACGCGGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGc                                   <  2:295549/148‑1 (MQ=255)
                                                                                                                    gTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTa                                                                     >  1:433295/1‑114 (MQ=255)
                                                                                                                    gTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTa                                                                     <  2:433295/114‑1 (MQ=255)
                                                                                                                       gcgAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGAGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGAAACAACTGGTGCGtac                               >  1:415849/1‑147 (MQ=255)
                                                                                                                             ggTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGgc                         <  1:825724/149‑1 (MQ=255)
                                                                                                                             ggTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGgc                         <  2:899380/149‑1 (MQ=255)
                                                                                                                             ggTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCAAAGATCGACATCAGCCCGTGCCACGTTTGTCATCAGTGTAAAAGGGAAGGGGTAATTCAGCCCAACAGTGCAGATTTTGGAAGAACTAGTGAGTATCCTgga                         >  2:165643/1‑148 (MQ=255)
                                                                                                                               tGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTAt                                                                                                 >  2:186966/1‑75 (MQ=255)
                                                                                                                                       aTAAGGCGTTAAAACTGCTTGATGAAGCTGAACTCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACTCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCttttt               <  1:550534/149‑1 (MQ=255)
                                                                                                                                           ggCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTAt           <  1:699487/149‑1 (MQ=255)
                                                                                                                                             cGTTAAATCTGCTTGATGAAGCTGAACGCCTGGGCTCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGc         <  1:870890/149‑1 (MQ=255)
                                                                                                                                              gTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGct        <  2:726231/149‑1 (MQ=255)
                                                                                                                                                taatACTGCTTTATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGcttc      >  1:253604‑M1/5‑149 (MQ=255)
                                                                                                                                                    ACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGcttccttc  <  2:709824‑M1/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
CGGTAGGTAACACGGCGGCACCAGCTGTGGCTGCACCCGCTCCGGCACCGGTGAAGAAAAGCGAGCCGATGCTCAACGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTC  >  NC_000913_3_pae_pgi/4249508‑4249804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.