| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 4028187 | 11 (0.680) | 4 (0.260) | 4/244 | 1.6 | 27.0% | coding (586/1164 nt) | fadA | 3‑ketoacyl‑CoA thiolase (thiolase I) |
| ? | NC_000913_3_pae_pgi | = 4028202 | 11 (0.700) | coding (571/1164 nt) | fadA | 3‑ketoacyl‑CoA thiolase (thiolase I) | |||||
TTCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_pgi/4028149‑4028187‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcCCGACCGGTGGTCACGATGCCGACGGCGTCCTGAAGCAGTTTAATTACGACGAAGTGATTCGCCCG < NC_000913_3_pae_pgi/4028202‑4028137 TTCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATCCCGACCGGTGGTCACGATGCCGACGGCGTCCTGAAGCAGTTTAATTACGACGAAGTGATTCGCCCG > 1:84119/1‑105TTCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATCCCGACCGGTGGTCACGATGCCGACGGCGTCCTGAAGCAGTTTAATTACGACGAAGTGATTCGCCCG < 2:84119/105‑1 ATTAAACTGCTTCAGGACGCCGTCGGCATCCCGACCGGTGGTCACGATGCCGACGGCGTCCTGAAGCAGTTTAAT < 1:104988/75‑1 ATTAAACTGCTTCAGGACGCCGTCGGCATCCCGACCGGTGGTCACGATGCCGACGGCGTCCTGAAGCAGTTTAAT > 2:104988/1‑75 TTCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_pgi/4028149‑4028187‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcCCGACCGGTGGTCACGATGCCGACGGCGTCCTGAAGCAGTTTAATTACGACGAAGTGATTCGCCCG < NC_000913_3_pae_pgi/4028202‑4028137 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |