New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 4028187	11 (0.680)	4 (0.260)	4/244	1.6	27.0%	coding (586/1164 nt)	fadA	3‑ketoacyl‑CoA thiolase (thiolase I)
	?	NC_000913_3_pae_pgi	= 4028202	11 (0.700)					coding (571/1164 nt)	fadA	3‑ketoacyl‑CoA thiolase (thiolase I)

TGCAGAAGATGTGCCCGCCGTTACCATACCGTTTACTGGATCAAACGCCGGACGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGGATGATTTCATTTTTAAATGCGGCCGACTGCGTGGCGGCCCAGGCGCGGGCGTGTGACCGCGCGGCAAAGGCATCCTGCATTTCACGGCTGATACCGTGCATACGCGCCAGCATTTCTGCCGTTAAGCCCATCATG  >  NC_000913_3_pae_pgi/4028053‑4028338                                                                                                                                                      |                                                                                                                                         tGCAGAAGATGTGCCCGCCGTTACCATACCGTTTACTGGATCAAACGCCGGACGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCgg                                                                                                                                          >  2:63679/1‑150 (MQ=255)                        ccATACCGTTTACTGGATCAAACGCCGGACGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGGATGATTTCATTTTTACATGCgg                                                                                                                   <  4:678/150‑1 (MQ=255)                                       gATCAAACGCCGGACGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCATAATTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGGATGATTTCATTTTTAAATGCGGCCGACTGCGTggcgg                                                                                                    <  2:153747/150‑1 (MQ=255)                                            aaCGCCGGACGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGGATGATTTCATTTTTAAATGCGGCCGACTGCGTGGCGGCCCAg                                                                                               >  1:82849/1‑150 (MQ=255)                                            aaCGCCGGACGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGGATGATTTCATTTTTAAATGCGGCCGACTGCGTGGCGGCCCAg                                                                                               >  2:7717/1‑150 (MQ=255)                                                    aCGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGGATGATTTCATTTTTAAATGCGGCCGACTGCGTGGCGGCCCAGGCGCGGGc                                                                                       <  3:22733/150‑1 (MQ=255)                                                        aGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTCCACTGCCTCCGGACGCCGTCGGCATCGTGACCACCGGTCGGGATGATTTCATTTTTAAATGCGGCCGACTGCGTGGCGGCCCAGGCGCGGGCgtgt                                                                                   <  1:201168/150‑1 (MQ=255)                                                                                     cGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGgatgccgacggcgtcctgaagcagtttaattacgacgaa                                                                                                   >  1:84119‑M2/1‑66 (MQ=255)                                                                                     cGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGgatgccgacggcgtcctgaagcagtttaattacgacgaa                                                                                                   <  2:84119‑M2/105‑40 (MQ=255)                                                                                               aCTTCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGGATGATTTCATTTTTAAATGCGGCCGACTGCGTGGCGGCCCAGGCGCGGGCGTGTGACCGCGCGGCAAAGGCATCCTGCATTTCACGGCTGATa                                            <  1:63679/150‑1 (MQ=255)                                                                                                          aTTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGgatgccgacggcgtcctgaagcagtttaat                                                                                                            <  1:104988‑M2/75‑31 (MQ=255)                                                                                                          aTTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGgatgccgacggcgtcctgaagcagtttaat                                                                                                            >  2:104988‑M2/1‑45 (MQ=255)                                                                                                           ttAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGGATGATTTCATTTTTAAATGCGGCCGACTGCGTGGCGGCCCAGGCGCGGGCGTGTGACCGCGCGGCAAAGGCATCCTGCATTTCACGGCTGATACCGTGCATAcgc                                <  2:82849/150‑1 (MQ=255)                                                                                                                               gTCGGCATCGTGACCACCGGTCGGGATGATTTCATTTTTAAATGCGGCCGACTGCGTGGCGGCCCAGGCGCGGGCGTGTGACCGCGCGGCAAAGGCATCCTGCATTTCACGGCTGATACCGTGCATACGCGCCAGCATTTCTGCCGTTaa            <  1:7717/150‑1 (MQ=255)                                                                                                                                    cATCGTGACCACCGGTCGGGATGATTTCATTTTTAAATGCGGCCGACTGCGTGGCGGCCCAGGTGCGGGCGTGTGACCGCGCGGCAAAGGCATCCTGCATTTCACGGCTGATACCGTGCATACGCGCCAGCATTTCTGCCGTTAAGCCca       >  1:138822/1‑150 (MQ=255)                                                                                                                                         tGACCACCGGTCGGGATGATTTCATTTTTAAATGCGGCCGACTGCGTGGCGGCCCAGGCGCGGGCGTGTGACCGCGCGGCAAAGGCATCCTGCATTTCACGGCTGATACCGTGCATACGCGCCAGCATTTCTGCCGTTAAGCCCATCATg  >  1:93759/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                         TGCAGAAGATGTGCCCGCCGTTACCATACCGTTTACTGGATCAAACGCCGGACGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGGATGATTTCATTTTTAAATGCGGCCGACTGCGTGGCGGCCCAGGCGCGGGCGTGTGACCGCGCGGCAAAGGCATCCTGCATTTCACGGCTGATACCGTGCATACGCGCCAGCATTTCTGCCGTTAAGCCCATCATG  >  NC_000913_3_pae_pgi/4028053‑4028338

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.