New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 4028187	11 (0.680)	4 (0.260)	4/244	1.6	27.0%	coding (586/1164 nt)	fadA	3‑ketoacyl‑CoA thiolase (thiolase I)
	?	NC_000913_3_pae_pgi	= 4028202	11 (0.700)					coding (571/1164 nt)	fadA	3‑ketoacyl‑CoA thiolase (thiolase I)

TGCAGAAGATGTGCCCGCCGTTACCATACCGTTTACTGGATCAAACGCCGGACGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGGATGATTTCATTTTTAAATGCGGCCGACTGCGTGGCGGCCCAGGCGCGGGCGTGTGACCGCGCGGCAAAGGCATCCTGCATTTCACGGCTGATACCGTGCATACGCGCCAGCATTTCTGCCGTTAAGCCCA  >  NC_000913_3_pae_pgi/4028053‑4028333                                                                                                                                       |                                                                                                                                                   tGCAGAAGATGTGCCCGCCGTTACCATACCGTTTACTGGATCAAACGCCGGACGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCgg                                                                                                                                     >  2:63679/1‑150 (MQ=255)                        ccATACCGTTTACTGGATCAAACGCCGGACGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGGATGATTTCATTTTTACATGCgg                                                                                                              <  4:678/150‑1 (MQ=255)                                       gATCAAACGCCGGACGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCATAATTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGGATGATTTCATTTTTAAATGCGGCCGACTGCGTggcgg                                                                                               <  2:153747/150‑1 (MQ=255)                                            aaCGCCGGACGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGGATGATTTCATTTTTAAATGCGGCCGACTGCGTGGCGGCCCAg                                                                                          >  1:82849/1‑150 (MQ=255)                                            aaCGCCGGACGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGGATGATTTCATTTTTAAATGCGGCCGACTGCGTGGCGGCCCAg                                                                                          >  2:7717/1‑150 (MQ=255)                                                    aCGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGGATGATTTCATTTTTAAATGCGGCCGACTGCGTGGCGGCCCAGGCGCGGGc                                                                                  <  3:22733/150‑1 (MQ=255)                                                        aGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTCCACTGCCTCCGGACGCCGTCGGCATCGTGACCACCGGTCGGGATGATTTCATTTTTAAATGCGGCCGACTGCGTGGCGGCCCAGGCGCGGGCgtgt                                                                              <  1:201168/150‑1 (MQ=255)                                                                                     cGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGgatgccgacggcgtcctgaagcagtttaattacgacgaa                                                                                              <  2:84119‑M2/105‑40 (MQ=255)                                                                                     cGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGgatgccgacggcgtcctgaagcagtttaattacgacgaa                                                                                              >  1:84119‑M2/1‑66 (MQ=255)                                                                                               aCTTCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGGATGATTTCATTTTTAAATGCGGCCGACTGCGTGGCGGCCCAGGCGCGGGCGTGTGACCGCGCGGCAAAGGCATCCTGCATTTCACGGCTGATa                                       <  1:63679/150‑1 (MQ=255)                                                                                                 ttCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATCccgaccggtggtcacgatgccgacggcgtcctgaagcagtttaattacgacgaagtgattcgcccg                                                                                  >  1:84119‑M1/1‑39 (MQ=255)                                                                                                 ttCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATCccgaccggtggtcacgatgccgacggcgtcctgaagcagtttaattacgacgaagtgattcgcccg                                                                                  <  2:84119‑M1/105‑67 (MQ=255)                                                                                                          aTTAAACTGCTTCAGGACGCCGTCGGCATCccgaccggtggtcacgatgccgacggcgtcctgaagcagtttaat                                                                                                       >  2:104988‑M1/1‑30 (MQ=255)                                                                                                          aTTAAACTGCTTCAGGACGCCGTCGGCATCccgaccggtggtcacgatgccgacggcgtcctgaagcagtttaat                                                                                                       <  1:104988‑M1/75‑46 (MQ=255)                                                                                                          aTTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGgatgccgacggcgtcctgaagcagtttaat                                                                                                       >  2:104988‑M2/1‑45 (MQ=255)                                                                                                          aTTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGgatgccgacggcgtcctgaagcagtttaat                                                                                                       <  1:104988‑M2/75‑31 (MQ=255)                                                                                                           ttAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGGATGATTTCATTTTTAAATGCGGCCGACTGCGTGGCGGCCCAGGCGCGGGCGTGTGACCGCGCGGCAAAGGCATCCTGCATTTCACGGCTGATACCGTGCATAcgc                           <  2:82849/150‑1 (MQ=255)                                                                                                                               gTCGGCATCGTGACCACCGGTCGGGATGATTTCATTTTTAAATGCGGCCGACTGCGTGGCGGCCCAGGCGCGGGCGTGTGACCGCGCGGCAAAGGCATCCTGCATTTCACGGCTGATACCGTGCATACGCGCCAGCATTTCTGCCGTTaa       <  1:7717/150‑1 (MQ=255)                                                                                                                                    cATCGTGACCACCGGTCGGGATGATTTCATTTTTAAATGCGGCCGACTGCGTGGCGGCCCAGGTGCGGGCGTGTGACCGCGCGGCAAAGGCATCCTGCATTTCACGGCTGATACCGTGCATACGCGCCAGCATTTCTGCCGTTAAGCCca  >  1:138822/1‑150 (MQ=255)                                                                                                                                       |                                                                                                                                                   TGCAGAAGATGTGCCCGCCGTTACCATACCGTTTACTGGATCAAACGCCGGACGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGACGCCGTCGGCATCGTGACCACCGGTCGGGATGATTTCATTTTTAAATGCGGCCGACTGCGTGGCGGCCCAGGCGCGGGCGTGTGACCGCGCGGCAAAGGCATCCTGCATTTCACGGCTGATACCGTGCATACGCGCCAGCATTTCTGCCGTTAAGCCCA  >  NC_000913_3_pae_pgi/4028053‑4028333

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.