mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 2,432,985 | 0 | A | G | 21.9% | 60.8 / 12.1 | 32 | intergenic (‑43/+27) | folC/accD | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase/acetyl‑CoA carboxylase, beta (carboxyltransferase) subunit |
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 20.0% | 73.0 / 17.4 | 45 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 125 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 2729955 = | NA (NA) | 8 (0.190) | 7/282 | 4.8 | NA | noncoding (1203/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_hsa_tpiA | 2729972 = | NA (NA) | noncoding (1186/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 224973 | 21 (0.490) | 8 (0.190) | 7/282 | 4.8 | 28.4% | noncoding (1203/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | 2729972 = | NA (NA) | noncoding (1186/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4045637 = | 74 (1.710) | 7 (0.170) | 5/272 | 5.6 | 9.1% | intergenic (+8/+33) | yihF/yihG | DUF945 family protein/inner membrane protein, inner membrane acyltransferase |
| ? | NC_000913_3_hsa_tpiA | 4045665 = | 71 (1.770) | intergenic (+36/+5) | yihF/yihG | DUF945 family protein/inner membrane protein, inner membrane acyltransferase | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1757148 | 40 (0.920) | 5 (0.120) | 5/278 | 5.7 | 11.3% | intergenic (+38/‑273) | pykF/lpp | pyruvate kinase I/murein lipoprotein |
| ? | NC_000913_3_hsa_tpiA | = 1757152 | 41 (1.000) | intergenic (+42/‑269) | pykF/lpp | pyruvate kinase I/murein lipoprotein | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1552255 | 28 (0.650) | 5 (0.120) | 5/280 | 5.7 | 7.7% | noncoding (7/97 nt) | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_hsa_tpiA | = 4080042 | 93 (2.260) | noncoding (23/98 nt) | REP297 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP297 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | 281896 = | 32 (0.740) | 5 (0.120) | 5/278 | 5.7 | 13.3% | coding (88/1155 nt) | yagA | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| ? | NC_000913_3_hsa_tpiA | 281923 = | 35 (0.860) | coding (61/1155 nt) | yagA | CP4‑6 prophage; putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1552255 | 28 (0.650) | 4 (0.100) | 4/270 | 6.1 | 12.8% | noncoding (7/97 nt) | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_hsa_tpiA | = 1552271 | 29 (0.730) | noncoding (23/97 nt) | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1552105 | 37 (0.860) | 4 (0.100) | 4/270 | 6.1 | 11.8% | noncoding (35/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_hsa_tpiA | = 1552243 | 26 (0.650) | intergenic (+252/+155) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4277010 = | 52 (1.200) | 4 (0.100) | 4/278 | 6.2 | 7.9% | coding (1558/1587 nt) | yjcC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| ? | NC_000913_3_hsa_tpiA | 4277034 = | 44 (1.080) | coding (1582/1587 nt) | yjcC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3525435 | 58 (1.340) | 4 (0.100) | 4/276 | 6.2 | 6.9% | intergenic (+12/+154) | mrcA/nudE | penicillin‑binding protein 1a, murein transglycosylase and transpeptidase/adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase |
| ? | NC_000913_3_hsa_tpiA | = 3525439 | 53 (1.300) | intergenic (+16/+150) | mrcA/nudE | penicillin‑binding protein 1a, murein transglycosylase and transpeptidase/adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase | |||||