mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 1,544,021 | 1 | . | A | 65.0% | 43.3 / 23.7 | 20 | coding (40/1389 nt) | narU | nitrate/nitrite transporter |
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 31.3% | 88.2 / 58.0 | 84 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_hsa_tpiA | 1,544,022 | 1 | . | A | 27.8% | 25.9 / 19.9 | 18 | coding (39/1389 nt) | narU | nitrate/nitrite transporter |
| Marginal new junction evidence (lowest skew 10 of 91 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 4542672 | 45 (0.930) | 6 (0.130) | 6/264 | 5.4 | 14.1% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_hsa_tpiA | = 4542968 | 31 (0.680) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4168380 = | 32 (0.660) | 6 (0.130) | 6/270 | 5.5 | 16.4% | noncoding (27/76 nt) | gltT | tRNA‑Glu |
| ? | NC_000913_3_hsa_tpiA | 4209801 = | NA (NA) | noncoding (46/76 nt) | gltV | tRNA‑Glu | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3943467 = | NA (NA) | 6 (0.130) | 6/270 | 5.5 | 16.8% | noncoding (33/76 nt) | gltU | tRNA‑Glu |
| ? | NC_000913_3_hsa_tpiA | 3943474 = | 31 (0.640) | noncoding (40/76 nt) | gltU | tRNA‑Glu | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 2729418 | 29 (0.600) | 6 (0.130) | 6/270 | 5.5 | 17.8% | noncoding (27/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913_3_hsa_tpiA | 3943480 = | NA (NA) | noncoding (46/76 nt) | gltU | tRNA‑Glu | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3783584 = | 49 (1.010) | 5 (0.110) | 5/266 | 5.9 | 9.6% | coding (78/1020 nt) | gpsA | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| ? | NC_000913_3_hsa_tpiA | 3783606 = | 48 (1.050) | coding (56/1020 nt) | gpsA | glycerol‑3‑phosphate dehydrogenase (NAD+) | |||||
| * | ? | NC_000913_3_hsa_tpiA | 381292 = | NA (NA) | 7 (0.150) | 5/264 | 5.9 | NA | intergenic (‑32/‑59) | yaiX/insC1 | pseudogene, interrupted by IS2A; hexapeptide transferase superfamily; putative transferase/IS2 repressor TnpA |
| ? | NC_000913_3_hsa_tpiA | 381312 = | NA (NA) | intergenic (‑52/‑39) | yaiX/insC1 | pseudogene, interrupted by IS2A; hexapeptide transferase superfamily; putative transferase/IS2 repressor TnpA | |||||
| * | ? | NC_000913_3_hsa_tpiA | 59616 = | 68 (1.400) | 5 (0.110) | 5/264 | 5.9 | 7.4% | intergenic (+337/+71) | yabP/rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent |
| ? | NC_000913_3_hsa_tpiA | 59638 = | 62 (1.370) | intergenic (+359/+49) | yabP/rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 16507 | NA (NA) | 5 (0.110) | 5/266 | 5.9 | NA | coding (1063/1113 nt) | insL1 | IS186 transposase |
| ? | NC_000913_3_hsa_tpiA | = 16511 | NA (NA) | coding (1067/1113 nt) | insL1 | IS186 transposase | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2141695 = | 54 (1.120) | 5 (0.110) | 5/268 | 6.0 | 8.8% | coding (521/582 nt) | dcd | deoxycytidine triphosphate deaminase; dCTP deaminase |
| ? | NC_000913_3_hsa_tpiA | 2141720 = | 52 (1.130) | coding (496/582 nt) | dcd | deoxycytidine triphosphate deaminase; dCTP deaminase | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 224973 | 18 (0.370) | 6 (0.130) | 5/270 | 6.0 | 25.8% | noncoding (1203/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | 2729972 = | NA (NA) | noncoding (1186/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||