mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 209 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 4542672 | 37 (0.700) | 9 (0.180) | 9/266 | 4.8 | 18.8% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_hsa_tpiA | = 4542968 | 43 (0.870) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3214950 | NA (NA) | 7 (0.140) | 7/264 | 5.5 | NA | intergenic (+62/+17) | rpoD/mug | RNA polymerase, sigma 70 (sigma D) factor/G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase |
| ? | NC_000913_3_hsa_tpiA | = 3214955 | NA (NA) | intergenic (+67/+12) | rpoD/mug | RNA polymerase, sigma 70 (sigma D) factor/G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 2230462 | 47 (0.890) | 7 (0.140) | 7/262 | 5.5 | 13.7% | intergenic (‑77/‑162) | dusC/yohJ | tRNA‑dihydrouridine synthase C/UPF0299 family inner membrane protein |
| ? | NC_000913_3_hsa_tpiA | = 2230470 | 45 (0.930) | intergenic (‑85/‑154) | dusC/yohJ | tRNA‑dihydrouridine synthase C/UPF0299 family inner membrane protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | 225154 = | NA (NA) | 7 (0.140) | 7/274 | 5.7 | NA | noncoding (1384/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | 225176 = | NA (NA) | noncoding (1406/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1097456 = | 19 (0.360) | 8 (0.160) | 6/268 | 6.0 | 30.2% | intergenic (+627/+109) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | 1097476 = | 19 (0.380) | intergenic (+647/+89) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1097287 = | 29 (0.550) | 8 (0.160) | 6/268 | 6.0 | 27.4% | intergenic (+458/+278) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | 1097464 = | 15 (0.300) | intergenic (+635/+101) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1097275 = | 23 (0.440) | 8 (0.160) | 6/268 | 6.0 | 28.2% | intergenic (+446/+290) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | 1097476 = | 19 (0.380) | intergenic (+647/+89) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1097275 = | 23 (0.440) | 8 (0.160) | 6/268 | 6.0 | 25.5% | intergenic (+446/+290) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_hsa_tpiA | 1097295 = | 25 (0.500) | intergenic (+466/+270) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 339911 | 59 (1.120) | 6 (0.120) | 6/270 | 6.1 | 8.7% | noncoding (155/358 nt) | REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913_3_hsa_tpiA | = 340015 | 70 (1.400) | noncoding (259/358 nt) | REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 339904 | 55 (1.100) | 6 (0.120) | 6/270 | 6.1 | 9.8% | noncoding (148/358 nt) | REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913_3_hsa_tpiA | = 2538632 | NA (NA) | noncoding (98/98 nt) | RIP174 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP174 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||