mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 29.8% | 198.3 / 96.5 | 134 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 298 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 1207790 = | 80 (0.880) | 20 (0.250) | 18/238 | 5.8 | 23.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | 1209619 = | 62 (0.780) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1207805 | 73 (0.810) | 13 (0.160) | 12/238 | 7.9 | 17.5% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | = 1209602 | 58 (0.730) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3923705 = | 85 (0.940) | 13 (0.160) | 11/246 | 8.6 | 14.2% | intergenic (‑25/+39) | rsmG/mnmG | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
| ? | NC_000913_3_hsa_tpiA | 3923733 = | 79 (0.960) | intergenic (‑53/+11) | rsmG/mnmG | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 | |||||
| * | ? | NC_000913_3_hsa_tpiA | 475959 = | 91 (1.000) | 12 (0.150) | 11/246 | 8.6 | 12.5% | intergenic (+8/+23) | ybaY/ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| ? | NC_000913_3_hsa_tpiA | 475985 = | 85 (1.030) | coding (387/390 nt) | ybaZ | excision repair protein, alkyltransferase‑like protein ATL | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 183661 | 85 (0.940) | 12 (0.140) | 11/250 | 8.7 | 13.1% | intergenic (+41/+48) | cdaR/yaeH | carbohydrate diacid regulon transcriptional regulator; autoregulator/UPF0325 family protein |
| ? | NC_000913_3_hsa_tpiA | = 183674 | 81 (0.970) | intergenic (+54/+35) | cdaR/yaeH | carbohydrate diacid regulon transcriptional regulator; autoregulator/UPF0325 family protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | 604744 = | 94 (1.040) | 11 (0.130) | 11/254 | 8.8 | 11.3% | intergenic (‑81/+27) | ybdG/nfsB | mechanosensitive channel protein, miniconductance/dihydropteridine reductase, NAD(P)H‑dependent, oxygen‑insensitive |
| ? | NC_000913_3_hsa_tpiA | 604762 = | 85 (1.000) | intergenic (‑99/+9) | ybdG/nfsB | mechanosensitive channel protein, miniconductance/dihydropteridine reductase, NAD(P)H‑dependent, oxygen‑insensitive | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3437896 = | 117 (1.290) | 10 (0.120) | 10/246 | 9.0 | 8.5% | intergenic (+2/‑128) | trkA/mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| ? | NC_000913_3_hsa_tpiA | 3437924 = | 109 (1.320) | intergenic (+30/‑100) | trkA/mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2700550 = | 93 (1.030) | 9 (0.120) | 9/232 | 9.0 | 10.0% | noncoding (31/77 nt) | ohsC | sRNA antisense regulator of shoB toxin |
| ? | NC_000913_3_hsa_tpiA | 2700601 = | 82 (1.050) | intergenic (+5/+17) | ohsC/acpS | sRNA antisense regulator of shoB toxin/holo‑[acyl‑carrier‑protein] synthase 1 | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 430996 | 112 (1.240) | 12 (0.180) +33 bp |
7/204 | 9.0 | 12.4% | noncoding (29/98 nt) | REP37 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP37 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_hsa_tpiA | 1552244 = | NA (NA) | intergenic (+253/+154) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 430996 | 112 (1.240) | 12 (0.180) +33 bp |
7/204 | 9.0 | 12.4% | noncoding (29/98 nt) | REP37 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP37 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_hsa_tpiA | 1552066 = | NA (NA) | intergenic (+75/+332) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator | |||||