New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3227830	52 (1.070)	4 (0.090)	4/274	6.8	7.3%	coding (30/1071 nt)	ygjJ	putative periplasmic protein
	?	NC_000913_3_pae_tpiA	= 3227835	53 (1.160)					coding (35/1071 nt)	ygjJ	putative periplasmic protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/3227676‑3227830 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagagcaAGTAATGCTCTGCATGGTGCAGTGATTAATTTCATTGTGTTAATCCATGAGCTAAAGAAAAAGTACAGCCTTTTATCGTTGTAATTATAAAAATATAAAGGCAGAAACTATTTTCCCTCTCCTCATCCAGGAAGAGGGAAAATGCCTG  <  NC_000913_3_pae_tpiA/3227835‑3227688                                                                                                                                                                                                                                                                                                                 ATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAACATAGTTTCTGCCTTCATCTTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGC                                                                                                                                                            >  1:747972/1‑149  TAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATAACTGCACCATGCA                                                                                                                                                           >  1:289321/1‑149  TAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGACTGTACTTTTTCTTTAGCTCATGGATTAACACACTCAAAGTAATCACTCCACCATGCA                                                                                                                                                           >  2:67230/1‑149      AAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGC                                                                                                                                                       >  1:375289/1‑149                  tTTTTCCCACTCCCGGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCAAGTAATGCTCT                                                                                                                                           <  1:754076/148‑1                      TCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTGATAATTTTATAATTACAGCGATAAAAGGCTGTACTTTTTCTTTAGCTCCTGGATTAACACAATGAAAATAATCACTGCACCATGCAGAGCAAGTAATGCTCTGCAT                                                                                                                                       <  2:310373/149‑1                                                                                         AAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCAAGTAATGCTCTGCATGGTGCAG                                                                                                                                >  1:463683/1‑89                                                                                         AAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCAAGTAATGCTCTGCATGGTGCAG                                                                                                                                <  2:463683/89‑1                                                                                                                                                      AGAGAAAGTAATGCTCTGCATGGTGCAGTGATTAATTTCATTGTGTTAATCCATGAGCTAAAGAAAAAGTACAGCCTTTTATCGTTGCAATTATGAAAATATAAAGGCAGAAACTATTTTCCCTCTCCTCATCCAGGAAGAGGGAAAAT       >  2:647318/1‑149                                                                                                                                                           AAGTAATGCTCTGCATGGTGCAGTGATTAATTTCATTGTGTTAATCCATGAGCTAAAGAAAAAGTACAGCCTTTTATCGTTGTAATTATAAAAATATAAAGGCAGAAACTATTTTCCCTCTCCTGATCAAGGAAGAGGGAAAATGCCTG  >  2:41049/1‑149                                                                                                                                                                                                                                                                                                                 ATAAAAAATGAGCAGGCATTTTCCCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/3227676‑3227830 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagagcaAGTAATGCTCTGCATGGTGCAGTGATTAATTTCATTGTGTTAATCCATGAGCTAAAGAAAAAGTACAGCCTTTTATCGTTGTAATTATAAAAATATAAAGGCAGAAACTATTTTCCCTCTCCTCATCCAGGAAGAGGGAAAATGCCTG  <  NC_000913_3_pae_tpiA/3227835‑3227688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.