mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 22.1% | 390.5 / 102.7 | 200 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 438 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 1207805 | 91 (0.800) | 25 (0.250) | 25/220 | 6.5 | 24.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | = 1209602 | 74 (0.750) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_tpiA | = 382205 | NA (NA) | 22 (0.200) | 22/250 | 8.7 | NA | coding (532/906 nt) | insD1 | IS2 transposase TnpB |
| ? | NC_000913_3_pae_tpiA | = 382224 | NA (NA) | coding (551/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3852844 | 135 (1.190) | 26 (0.250) | 18/230 | 9.2 | 17.4% | intergenic (‑60/+46) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide |
| ? | NC_000913_3_pae_tpiA | = 3852855 | 123 (1.190) | intergenic (‑71/+35) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide | |||||
| * | ? | NC_000913_3_pae_tpiA | 1207790 = | 98 (0.860) | 17 (0.170) | 15/220 | 9.9 | 17.3% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | 1209619 = | 77 (0.780) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_tpiA | = 715221 | 112 (0.990) | 16 (0.150) | 16/230 | 10.0 | 13.3% | intergenic (+23/‑191) | pgm/ybfP | phosphoglucomutase/lipoprotein |
| ? | NC_000913_3_pae_tpiA | = 715231 | 107 (1.030) | intergenic (+33/‑181) | pgm/ybfP | phosphoglucomutase/lipoprotein | |||||
| * | ? | NC_000913_3_pae_tpiA | 1096988 = | 98 (0.860) | 22 (0.200) | 16/246 | 10.7 | 18.7% | intergenic (+159/+577) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_pae_tpiA | 1097191 = | NA (NA) | intergenic (+362/+374) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_pae_tpiA | = 225685 | 132 (1.160) | 22 (0.200) | 15/240 | 10.8 | 14.9% | intergenic (+110/‑74) | alaV/rrlH | tRNA‑Ala/23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_pae_tpiA | = 3943636 | NA (NA) | intergenic (+126/‑68) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4283145 | 131 (1.150) | 20 (0.190) | 14/232 | 10.9 | 14.3% | intergenic (‑154/+24) | yjcF/actP | pentapeptide repeats protein/acetate transporter |
| ? | NC_000913_3_pae_tpiA | = 4283149 | 119 (1.140) | intergenic (‑158/+20) | yjcF/actP | pentapeptide repeats protein/acetate transporter | |||||
| * | ? | NC_000913_3_pae_tpiA | = 1062575 | NA (NA) | 16 (0.150) | 15/242 | 10.9 | 13.0% | coding (281/306 nt) | cbpM | modulator of CbpA co‑chaperone |
| ? | NC_000913_3_pae_tpiA | = 1062596 | 107 (0.980) | coding (260/306 nt) | cbpM | modulator of CbpA co‑chaperone | |||||
| * | ? | NC_000913_3_pae_tpiA | 3423270 = | 116 (1.020) | 14 (0.130) | 14/236 | 11.1 | 14.0% | intergenic (+76/+153) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_pae_tpiA | = 4171804 | 63 (0.590) | intergenic (+132/‑169) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||