mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 32.8% | 251.9 / 162.7 | 186 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 469 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 59280 = | 120 (0.970) | 28 (0.260) | 22/226 | 8.6 | 21.8% | intergenic (+1/+407) | yabP/rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent |
| ? | NC_000913_3_pae_tpiA | 59320 = | 97 (0.910) | intergenic (+41/+367) | yabP/rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3427065 | NA (NA) | 25 (0.220) | 21/242 | 9.7 | NA | intergenic (‑32/+11) | alaU/ileU | tRNA‑Ala/tRNA‑Ile |
| ? | NC_000913_3_pae_tpiA | = 3427068 | NA (NA) | intergenic (‑35/+8) | alaU/ileU | tRNA‑Ala/tRNA‑Ile | |||||
| * | ? | NC_000913_3_pae_tpiA | 225456 = | 10 (0.080) | 25 (0.220) | 21/242 | 9.7 | 72.9% | noncoding (76/77 nt) | ileV | tRNA‑Ile |
| ? | NC_000913_3_pae_tpiA | = 3427056 | NA (NA) | intergenic (‑23/+20) | alaU/ileU | tRNA‑Ala/tRNA‑Ile | |||||
| * | ? | NC_000913_3_pae_tpiA | 1096961 = | 104 (0.840) | 15 (0.190) +47 bp |
10/166 | 10.4 | 18.5% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_pae_tpiA | 1097243 = | NA (NA) | intergenic (+414/+322) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_pae_tpiA | 1096961 = | 104 (0.840) | 15 (0.190) +47 bp |
10/166 | 10.4 | 18.7% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_pae_tpiA | 1097062 = | 101 (0.820) | intergenic (+233/+503) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_pae_tpiA | 225468 = | 20 (0.160) | 22 (0.190) | 18/242 | 10.9 | 54.2% | intergenic (+11/‑32) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| ? | NC_000913_3_pae_tpiA | = 3427068 | NA (NA) | intergenic (‑35/+8) | alaU/ileU | tRNA‑Ala/tRNA‑Ile | |||||
| * | ? | NC_000913_3_pae_tpiA | 225456 = | 10 (0.080) | 22 (0.190) | 18/242 | 10.9 | 60.9% | noncoding (76/77 nt) | ileV | tRNA‑Ile |
| ? | NC_000913_3_pae_tpiA | 225477 = | 19 (0.170) | intergenic (+20/‑23) | ileV/alaV | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913_3_pae_tpiA | = 1674954 | 124 (1.000) | 19 (0.170) | 16/240 | 11.6 | 14.4% | intergenic (+7/+18) | tqsA/pntB | pheromone AI‑2 transporter/pyridine nucleotide transhydrogenase, beta subunit |
| ? | NC_000913_3_pae_tpiA | = 1674958 | 112 (0.980) | intergenic (+11/+14) | tqsA/pntB | pheromone AI‑2 transporter/pyridine nucleotide transhydrogenase, beta subunit | |||||
| * | ? | NC_000913_3_pae_tpiA | 3908513 = | 141 (1.140) | 20 (0.170) | 17/250 | 11.7 | 13.0% | intergenic (‑147/+36) | pstB/pstA | phosphate ABC transporter ATPase/phosphate ABC transporter permease |
| ? | NC_000913_3_pae_tpiA | 4314206 = | 133 (1.120) | intergenic (+93/+54) | yjdP/phnP | putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase | |||||
| * | ? | NC_000913_3_pae_tpiA | = 2282829 | 127 (1.030) | 15 (0.130) | 15/236 | 11.9 | 11.4% | intergenic (+28/+111) | rplY/yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| ? | NC_000913_3_pae_tpiA | = 2282833 | 118 (1.050) | intergenic (+32/+107) | rplY/yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein | |||||