mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 27 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 3220891 | NA (NA) | 7 (0.200) | 6/256 | 3.7 | NA | noncoding (12/31 nt) | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913_3_pae_tpiA | = 3220898 | NA (NA) | noncoding (19/31 nt) | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4542606 | 25 (0.640) | 6 (0.160) | 6/262 | 3.8 | 16.8% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | = 4542902 | 36 (0.980) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | 4542598 = | 29 (0.740) | 7 (0.190) | 6/262 | 3.8 | 18.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | 4542912 = | 36 (0.980) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | 2412629 = | 37 (0.940) | 5 (0.140) | 5/260 | 4.2 | 12.2% | intergenic (‑35/+48) | yfbU/yfbV | UPF0304 family protein/UPF0208 family inner membrane protein |
| ? | NC_000913_3_pae_tpiA | 2412656 = | 38 (1.040) | intergenic (‑62/+21) | yfbU/yfbV | UPF0304 family protein/UPF0208 family inner membrane protein | |||||
| * | ? | NC_000913_3_pae_tpiA | = 82289 | 43 (1.090) | 5 (0.130) | 5/266 | 4.3 | 10.9% | coding (1241/1572 nt) | leuA | 2‑isopropylmalate synthase |
| ? | NC_000913_3_pae_tpiA | = 82309 | 41 (1.100) | coding (1221/1572 nt) | leuA | 2‑isopropylmalate synthase | |||||
| * | ? | NC_000913_3_pae_tpiA | = 315852 | NA (NA) | 5 (0.130) | 5/272 | 4.4 | NA | coding (266/867 nt) | insF1 | IS3 transposase B |
| ? | NC_000913_3_pae_tpiA | = 315875 | NA (NA) | coding (289/867 nt) | insF1 | IS3 transposase B | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4038798 | 31 (0.790) | 4 (0.110) | 4/268 | 4.7 | 12.4% | noncoding (1280/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| ? | NC_000913_3_pae_tpiA | = 4038805 | 27 (0.720) | noncoding (1287/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3944991 | NA (NA) | 4 (0.110) | 4/268 | 4.7 | 11.9% | noncoding (1288/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_pae_tpiA | = 4038798 | 31 (0.790) | noncoding (1280/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_pae_tpiA | = 2662541 | NA (NA) | 4 (0.110) | 4/266 | 4.7 | NA | noncoding (233/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913_3_pae_tpiA | = 2662574 | NA (NA) | noncoding (266/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | = 2662450 | 35 (0.940) | 4 (0.110) | 4/266 | 4.7 | 10.3% | noncoding (142/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913_3_pae_tpiA | = 2662574 | NA (NA) | noncoding (266/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||