mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 26.9% | 31.8 / 11.5 | 26 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 4589024 | 31 (2.380) | 3 (0.250) | 3/234 | 1.4 | 9.2% | intergenic (‑29/+21) | yjiX/yjiY | DUF466 family protein/putative transporter |
| ? | NC_000913_3_pae_tpiA | = 4589028 | 30 (2.460) | intergenic (‑33/+17) | yjiX/yjiY | DUF466 family protein/putative transporter | |||||
| * | ? | NC_000913_3_pae_tpiA | 485590 = | 21 (1.610) | 3 (0.240) | 3/238 | 1.4 | 13.1% | coding (30/1194 nt) | acrA | multidrug efflux system |
| ? | NC_000913_3_pae_tpiA | 485609 = | 20 (1.610) | coding (11/1194 nt) | acrA | multidrug efflux system | |||||